Browse Element(s) Details


Os.50198.1.S1_at

Description gb:AK072653.1
DB_XREF= gi:32982676
TID=Os.50198.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.50198 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023134L04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023134L04, full insert sequence.
FL= gb:AK120039.1 gb:AK064058.1 gb:AK072653.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4018010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40160OsAffx.22040.2.S1_at10/1112+24823818..24827253hypothetical protein
LOC_Os12g40160OsAffx.22040.1.S1_x_at1/1112+24823818..24827253hypothetical protein
LOC_Os12g40170OsAffx.7840.1.S1_at11/1112+24829250..24829504hypothetical protein
LOC_Os12g40180Os.50198.1.S1_at10/1112+24838217..24838785expressed protein
LOC_Os12g40190Os.27677.1.S1_at11/1112+24838938..24843663extra-large guanine nucleotide binding protein, putative, expressed
LOC_Os12g40200OsAffx.20048.1.S1_at11/1112+24849179..24852034hypothetical protein
LOC_Os12g40200Os.52178.1.S1_at1/1112+24849179..24852034hypothetical protein
LOC_Os12g40210OsAffx.7841.1.S1_at11/1112+24858494..24858930hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50198.1.S1_at--919--6011Chr12:24838217..24838236 (20 bp)
GAGAGAGGATCGATCCATCACTTGC
NONE
Os.50198.1.S1_at--119--3571Chr12:24838227..24838251 (25 bp)
CATCACTTGCAGCATTTGCGATTTC
LOC_Os12g40180
Os.50198.1.S1_at--58--5071Chr12:24838235..24838259 (25 bp)
GCAGCATTTGCGATTTCTCTCTCAG
LOC_Os12g40180
Os.50198.1.S1_at--188--8511Chr12:24838372..24838396 (25 bp)
TGGCAGGCCATGGTGAGCACAGACC
LOC_Os12g40180
Os.50198.1.S1_at--650--4551Chr12:24838564..24838588 (25 bp)
GCGCCCAGCTGATCGTCCGTGACGT
LOC_Os12g40180
Os.50198.1.S1_at--962--4191Chr12:24838603..24838627 (25 bp)
CCCCGAGCTAATCGTGACGTCATAG
LOC_Os12g40180
Os.50198.1.S1_at--1046--4011Chr12:24838620..24838644 (25 bp)
CGTCATAGACGCGTTTGTAAAGAGA
LOC_Os12g40180
Os.50198.1.S1_at--830--1391Chr12:24838653..24838677 (25 bp)
AGACGATGACGCGTATCCCCGGGAG
LOC_Os12g40180
Os.50198.1.S1_at--204--9311Chr12:24838668..24838692 (25 bp)
TCCCCGGGAGGAAATGGCAAGCCAC
LOC_Os12g40180
Os.50198.1.S1_at--585--8231Chr12:24838683..24838707 (25 bp)
GGCAAGCCACGCTGTATATATTTGA
LOC_Os12g40180
Os.50198.1.S1_at--992--231Chr12:24838698..24838722 (25 bp)
ATATATTTGACTTGTCGCTGCTGCT
LOC_Os12g40180
Target Sequence 
GAGAGAGGATCGATCCATCACTTGCAGCATTTGCGATTTCTCTCTCAGCNTAATTCGCATCAAGTCAACCATGTCTTCGG
CGACGGCGACGGCGTCCGGTGGGCTGCATGCCGCCGGCGGCGAGTGGCTCGGCGAGCTCTCCGCCGCGCTGCAGGGGAAG
TGGCAGGCCATGGTGAGCACAGACCAGCGGCGGCGGCGGCAGANGGGAGATGAGGCAGACGAGAAGAAGGGGGTCGCCGG
CGCCGGCGCCGCCCTCGGCGTGGAGACGAGGAGGAGGAAAGAGGAGGGAGACGTCGGCGCGTGCGGCGGCGCCATGTCCG
ACACCACCGTCTTCCTCCTCCTCGACCACTTCGCGCCCAGCTGATCGTCCGTGACGTCACCCATGGCGCGCCCCCGAGCT
AATCGTGACGTCATAGACGCGTTTGTAAAGAGAAGAGTAGTAGACGATGACGCGTATCCCCGGGAGGAAATGGCAAGCCA
CGCTGTATATATTTGACTTGTCGCTGCTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50198.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis