Browse Element(s) Details


OsAffx.20048.1.S1_at

Description tigr:9640.m03928
TID=OsAffx.20048.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4020011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40160OsAffx.22040.2.S1_at10/1112+24823818..24827253hypothetical protein
LOC_Os12g40160OsAffx.22040.1.S1_x_at1/1112+24823818..24827253hypothetical protein
LOC_Os12g40170OsAffx.7840.1.S1_at11/1112+24829250..24829504hypothetical protein
LOC_Os12g40180Os.50198.1.S1_at10/1112+24838217..24838785expressed protein
LOC_Os12g40190Os.27677.1.S1_at11/1112+24838938..24843663extra-large guanine nucleotide binding protein, putative, expressed
LOC_Os12g40200OsAffx.20048.1.S1_at11/1112+24849179..24852034hypothetical protein
LOC_Os12g40200Os.52178.1.S1_at1/1112+24849179..24852034hypothetical protein
LOC_Os12g40210OsAffx.7841.1.S1_at11/1112+24858494..24858930hypothetical protein
LOC_Os12g40220OsAffx.24119.1.S1_at3/1112+24865335..24865688hypothetical protein
LOC_Os12g40230OsAffx.25936.1.S1_s_at8/1112+24869226..24871717transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g40230OsAffx.25936.7.S1_s_at8/1112+24869226..24871717transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g40230OsAffx.25936.2.S1_x_at7/1112+24869226..24871717transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g40230OsAffx.25936.5.S1_x_at2/1112+24869226..24871717transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g40240OsAffx.20049.1.S1_x_at11/1112+24872172..24873881hypothetical protein
LOC_Os12g40240OsAffx.6016.1.S1_at5/1112+24872172..24873881hypothetical protein
LOC_Os12g40240OsAffx.6016.1.S1_x_at4/1112+24872172..24873881hypothetical protein
LOC_Os12g40250Os.10827.1.S1_x_at9/1112+24874566..24877838transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g40250Os.46055.2.S1_x_at6/1112+24874566..24877838transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20048.1.S1_at--243--6371Chr12:24850942..24850966 (25 bp)
GATCCGTAAGTACTTTGGTTCACCA
LOC_Os12g40200
OsAffx.20048.1.S1_at--183--10871Chr12:24850928..24850952 (25 bp)
TTGGTTCACCAATCACTGTCAGTAC
LOC_Os12g40200
OsAffx.20048.1.S1_at--13--9691Chr12:24850916..24850940 (25 bp)
TCACTGTCAGTACCATCAAGAAGCT
LOC_Os12g40200
OsAffx.20048.1.S1_at--216--5411Chr12:24850897..24850921 (25 bp)
GAAGCTCATCCTTGACAATCTGTTG
LOC_Os12g40200
OsAffx.20048.1.S1_at--605--6531Chr12:24850755..24850779 (25 bp)
GATTTCTCGACGAGCGTGCTCATCT
LOC_Os12g40200
OsAffx.20048.1.S1_at--201--8251Chr12:24850730..24850754 (25 bp)
GGCACATTGCAACAGACATGCGCTA
LOC_Os12g40200
OsAffx.20048.1.S1_at--955--6291Chr12:24850624..24850648 (25 bp)
GATGAGCAGGCAGCTTTCAAGCTAC
LOC_Os12g40200
OsAffx.20048.1.S1_at--809--1551Chr12:24850613..24850637 (25 bp)
AGCTTTCAAGCTACATCATCTATCT
LOC_Os12g40200
OsAffx.20048.1.S1_at--268--9611Chr12:24850598..24850622 (25 bp)
TCATCTATCTTGTCTTCAACTGCGG
LOC_Os12g40200
OsAffx.20048.1.S1_at--671--2551Chr12:24850581..24850605 (25 bp)
AACTGCGGCGTGATGTGCTTACTAG
LOC_Os12g40200
OsAffx.20048.1.S1_at--100--9131Chr12:24850460..24850484 (25 bp)
TGCTGTTGTGACGAAGCTTCTTCTT
LOC_Os12g40200
Target Sequence 
GATCCGTAAGTACTTTGGTTCACCAATCACTGTCAGTACCATCAAGAAGCTCATCCTTGACAATCTGTTGCACTTTGGAA
CAAGAGCTGAATGGAACTGTTCCAGCTCCCGTGGCCAGCTAGCGCTTAGAAAGTGGAAGGCTGCTGCTGCTGGTTCTGCA
CTAGACAAGAGCACCAGCAGCGGCGTCGATTTCTCGACGAGCGTGCTCATCTGGCACATTGCAACAGACATGCGCTACTA
CACCACCACCAGAGATGGCGACAGCAGCAGCATATGTTCAGATGATGATCGAGTGAAGACGACCAAGGAGCGAAAGGAGA
TGAGCAGGCAGCTTTCAAGCTACATCATCTATCTTGTCTTCAACTGCGGCGTGATGTGCTTACTAGCAAGTCAAGGTAAC
AACCCAGATGAGAAGGTTGCTGTTGTGACGAAGCTTCTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20048.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis