Browse Element(s) Details


OsAffx.6016.1.S1_x_at

Description tigr:9636.m03384
TID=OsAffx.6016.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g337707/11hypothetical protein
LOC_Os12g402404/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g33760Os.10827.1.S1_x_at9/118+20983522..20987873transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g33760Os.46055.2.S1_x_at7/118+20983522..20987873transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g33760OsAffx.18122.1.S1_x_at1/118+20983522..20987873transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g33770OsAffx.6016.1.S1_x_at7/118+20988701..20989840hypothetical protein
LOC_Os08g33770OsAffx.6016.1.S1_at5/118+20988701..20989840hypothetical protein
LOC_Os08g33780OsAffx.25936.7.S1_s_at10/118+20994211..20997204transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g33780OsAffx.25936.2.S1_x_at9/118+20994211..20997204transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g33780OsAffx.25936.1.S1_s_at9/118+20994211..20997204transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g33780OsAffx.25936.5.S1_x_at2/118+20994211..20997204transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g33790NANA8+21003135..21003344hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6016.1.S1_x_at--850--8771NONE
TGTTTCCTGGGACTGCAAGTCATCC
NONE
OsAffx.6016.1.S1_x_at--743--10291NONE
TTTCCTGGGACTGCAAGTCATCCAT
NONE
OsAffx.6016.1.S1_x_at--490--3891NONE
CTGGGACTGCAAGTCATCCATCCAA
NONE
OsAffx.6016.1.S1_x_at--89--7631NONE
GGGACTGCAAGTCATCCATCCAAAC
NONE
OsAffx.6016.1.S1_x_at--896--3517Chr12:24873474..24873498 (25 bp)
CATCCATCCAAACTGCAATTCATCA
LOC_Os12g40240
OsAffx.6016.1.S1_x_at--616--3535Chr12:24873478..24873502 (25 bp)
CATCCAAACTGCAATTCATCAATTC
LOC_Os12g40240
OsAffx.6016.1.S1_x_at--521--3153Chr12:24873359..24873522 (25 bp)
AATTCATCATCTCATCAGGAGGAGG
LOC_Os12g40240
OsAffx.6016.1.S1_x_at--19--133Chr12:24873360..24873523 (25 bp)
ATTCATCATCTCATCAGGAGGAGGG
LOC_Os12g40240
OsAffx.6016.1.S1_x_at--286--9351Chr08:20989050..20989074 (25 bp)
TCGCACCTAGTCTGCGGTCGAGGAG
LOC_Os08g33770
OsAffx.6016.1.S1_x_at--347--1871Chr08:20988993..20989017 (25 bp)
ACGTCCGGGTCGTGGATCCCAGCGT
LOC_Os08g33770
OsAffx.6016.1.S1_x_at--1031--7111Chr08:20988925..20988949 (25 bp)
GTCATGGATCCCGATGTCGTCTTGG
LOC_Os08g33770
Target Sequence 
TGTTTCCTGGGACTGCAAGTCATCCATCCAAACTGCAATTCATCAATTCATCATCTCATCAGGAGGAGGGGGGCGTCGCA
CCTAGTCTGCGGTCGAGGAGAAGAGGTCGGGGAGGCGGCGTCTTGGCGGCCGACGTCCGGGTCGTGGATCCCAGCGTCGG
GGAGGTCGGGGAGGCGGTGGTCGGCGGTGCAGTTGCCGGCGTCATGGATCCCGATGTCGTCTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6016.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis