Browse Element(s) Details


OsAffx.6016.1.S1_at

Description tigr:9636.m03384
TID=OsAffx.6016.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g402405/11hypothetical protein
LOC_Os08g337705/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40200OsAffx.20048.1.S1_at11/1112+24849179..24852034hypothetical protein
LOC_Os12g40200Os.52178.1.S1_at1/1112+24849179..24852034hypothetical protein
LOC_Os12g40210OsAffx.7841.1.S1_at11/1112+24858494..24858930hypothetical protein
LOC_Os12g40220OsAffx.24119.1.S1_at3/1112+24865335..24865688hypothetical protein
LOC_Os12g40230OsAffx.25936.1.S1_s_at8/1112+24869226..24871717transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g40230OsAffx.25936.7.S1_s_at8/1112+24869226..24871717transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g40230OsAffx.25936.2.S1_x_at7/1112+24869226..24871717transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g40230OsAffx.25936.5.S1_x_at2/1112+24869226..24871717transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g40240OsAffx.20049.1.S1_x_at11/1112+24872172..24873881hypothetical protein
LOC_Os12g40240OsAffx.6016.1.S1_at5/1112+24872172..24873881hypothetical protein
LOC_Os12g40240OsAffx.6016.1.S1_x_at4/1112+24872172..24873881hypothetical protein
LOC_Os12g40250Os.10827.1.S1_x_at9/1112+24874566..24877838transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g40250Os.46055.2.S1_x_at6/1112+24874566..24877838transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g40260NANA12+24881964..24883484transducin family protein, putative, expressed
LOC_Os12g40270OsAffx.32117.1.S1_x_at11/1112+24889801..24890274hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6016.1.S1_at--849--8771NONE
TGTTTCCTGGGACTGCAAGTCATCC
NONE
OsAffx.6016.1.S1_at--744--10291NONE
TTTCCTGGGACTGCAAGTCATCCAT
NONE
OsAffx.6016.1.S1_at--886--10651NONE
TTCCTGGGACTGCAAGTCATCCATC
NONE
OsAffx.6016.1.S1_at--491--3891NONE
CTGGGACTGCAAGTCATCCATCCAA
NONE
OsAffx.6016.1.S1_at--127--8651NONE
TGGGACTGCAAGTCATCCATCCAAA
NONE
OsAffx.6016.1.S1_at--88--7631NONE
GGGACTGCAAGTCATCCATCCAAAC
NONE
OsAffx.6016.1.S1_at--895--3517Chr12:24873474..24873498 (25 bp)
CATCCATCCAAACTGCAATTCATCA
LOC_Os12g40240
OsAffx.6016.1.S1_at--822--9234Chr12:24873476..24873500 (25 bp)
TCCATCCAAACTGCAATTCATCAAT
LOC_Os12g40240
OsAffx.6016.1.S1_at--617--3535Chr12:24873478..24873502 (25 bp)
CATCCAAACTGCAATTCATCAATTC
LOC_Os12g40240
OsAffx.6016.1.S1_at--522--3153Chr12:24873359..24873522 (25 bp)
AATTCATCATCTCATCAGGAGGAGG
LOC_Os12g40240
OsAffx.6016.1.S1_at--20--133Chr12:24873360..24873523 (25 bp)
ATTCATCATCTCATCAGGAGGAGGG
LOC_Os12g40240
Target Sequence 
TGTTTCCTGGGACTGCAAGTCATCCATCCAAACTGCAATTCATCAATTCATCATCTCATCAGGAGGAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6016.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis