Browse Element(s) Details


OsAffx.22040.2.S1_at

Description tigr:9640.m03924
TID=OsAffx.22040.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4016010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40160OsAffx.22040.2.S1_at10/1112+24823818..24827253hypothetical protein
LOC_Os12g40160OsAffx.22040.1.S1_x_at1/1112+24823818..24827253hypothetical protein
LOC_Os12g40170OsAffx.7840.1.S1_at11/1112+24829250..24829504hypothetical protein
LOC_Os12g40180Os.50198.1.S1_at10/1112+24838217..24838785expressed protein
LOC_Os12g40190Os.27677.1.S1_at11/1112+24838938..24843663extra-large guanine nucleotide binding protein, putative, expressed
LOC_Os12g40200OsAffx.20048.1.S1_at11/1112+24849179..24852034hypothetical protein
LOC_Os12g40200Os.52178.1.S1_at1/1112+24849179..24852034hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22040.2.S1_at--106--6211Chr12:24824571..24824595 (25 bp)
GAGGCATCAGGAATTGTCATTTCGC
LOC_Os12g40160
OsAffx.22040.2.S1_at--533--8211Chr12:24824562..24824586 (25 bp)
GGAATTGTCATTTCGCCGAGATGGC
LOC_Os12g40160
OsAffx.22040.2.S1_at--1000--1312Chr03:31386859..31386878 (20 bp)
AGATGGCGCACGCAACACTGCCCAG
NONE
OsAffx.22040.2.S1_at--711--2451Chr12:24824531..24824555 (25 bp)
AACACTGCCCAGAGATTTCGAAACC
LOC_Os12g40160
OsAffx.22040.2.S1_at--194--6051NONE
GAGATTTCGAAACCAAAGCACACTA
NONE
OsAffx.22040.2.S1_at--368--2351Chr12:24824251..24824530 (25 bp)
AAAGCACACTAGATCTGGCCCTGCC
LOC_Os12g40160
OsAffx.22040.2.S1_at--21--2731Chr12:24824081..24824105 (25 bp)
AAGACGTTAGTGATGGAGTCCCTCT
LOC_Os12g40160
OsAffx.22040.2.S1_at--4--831Chr12:24824069..24824093 (25 bp)
ATGGAGTCCCTCTGGATGACGGTAG
LOC_Os12g40160
OsAffx.22040.2.S1_at--973--4171Chr12:24823896..24823920 (25 bp)
CCCAGGGCAGCGGAGCACTGTGAAT
LOC_Os12g40160
OsAffx.22040.2.S1_at--1089--6154Chr03:24105295..24105316 (22 bp)
GATGAAGTGGAAGCCGATCCCGTCG
NONE
OsAffx.22040.2.S1_at--284--551Chr12:24823853..24823877 (25 bp)
ATCCCGTCGGTTCGTGTATGGTTGA
LOC_Os12g40160
Target Sequence 
GAGGCATCAGGAATTGTCATTTCGCCGAGATGGCGCACGCAACACTGCCCAGAGATTTCGAAACCAAAGCACACTAGATC
TGGCCCTGCCGCCGCCAGAGCTGACCGGCGTCTACGCGGCGGCGGGGAGGTGGGAGGCGGAGGTGCGGAGGTGGCGGCCA
GAGGCAGCCGGGCCTGCGCCTGGCCGTGTGGATTGGGGATGGCTGGAGGTGGTCGGGAGGGCGGTGGAGAGTGGCAAGAC
GTTAGTGATGGAGTCCCTCTGGATGACGGTAGGGGCGGCGAAGCACGGCTGTGGCCTAGTGGCAGCGGCTCCCGTCGGCG
CCAATGGCCCTAGGGGCTGCGGCGGCCCAGGAGGGCGGCGTCTCCCGTCGCCGCCGGCAGCCCTAGGGGCTGCTGCGGAA
GACGGCGTTGGTGCCGGTGGCCCAGGGCAGCGGAGCACTGTGAATCCGATGAAGTGGAAGCCGATCCCGTCGGTTCGTGT
ATGGTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22040.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis