Browse Element(s) Details


Os.27677.1.S1_at

Description gb:AK067863.1
DB_XREF= gi:32977881
TID=Os.27677.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.27677 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013128N09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013128N09, full insert sequence.
FL= gb:AK067863.1 gb:AK060570.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4019011/11extra-large guanine nucleotide binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40160OsAffx.22040.2.S1_at10/1112+24823818..24827253hypothetical protein
LOC_Os12g40160OsAffx.22040.1.S1_x_at1/1112+24823818..24827253hypothetical protein
LOC_Os12g40170OsAffx.7840.1.S1_at11/1112+24829250..24829504hypothetical protein
LOC_Os12g40180Os.50198.1.S1_at10/1112+24838217..24838785expressed protein
LOC_Os12g40190Os.27677.1.S1_at11/1112+24838938..24843663extra-large guanine nucleotide binding protein, putative, expressed
LOC_Os12g40200OsAffx.20048.1.S1_at11/1112+24849179..24852034hypothetical protein
LOC_Os12g40200Os.52178.1.S1_at1/1112+24849179..24852034hypothetical protein
LOC_Os12g40210OsAffx.7841.1.S1_at11/1112+24858494..24858930hypothetical protein
LOC_Os12g40220OsAffx.24119.1.S1_at3/1112+24865335..24865688hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0001789biological_processG-protein signaling, coupled to S1P second messenger (sphingosine kinase activating)
GO:0006499biological_processN-terminal protein myristoylation
GO:0006800biological_processoxygen and reactive oxygen species metabolism
GO:0007186biological_processG-protein coupled receptor protein signaling pathway
GO:0008219biological_processcell death
GO:0009738biological_processabscisic acid mediated signaling
GO:0009740biological_processgibberellic acid mediated signaling
GO:0009845biological_processseed germination
GO:0010119biological_processregulation of stomatal movement
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0005886cellular_componentplasma membrane
GO:0004871molecular_functionsignal transducer activity
GO:0016247molecular_functionchannel regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27677.1.S1_at--471--9451Chr12:24839504..24839528 (25 bp)
TCGGCAAATCTCCTTTAACATCATG
LOC_Os12g40190
Os.27677.1.S1_at--30--9811Chr12:24839489..24839513 (25 bp)
TAACATCATGCGACTGGTTCAGCGA
LOC_Os12g40190
Os.27677.1.S1_at--633--5191Chr12:24839444..24839468 (25 bp)
GCAATCTGATCAACGGCACCAGCAA
LOC_Os12g40190
Os.27677.1.S1_at--1100--1931Chr12:24839400..24839424 (25 bp)
ACTGGCTCGACATTGGCGCAGATGG
LOC_Os12g40190
Os.27677.1.S1_at--516--1311Chr12:24839381..24839405 (25 bp)
AGATGGCGGGTCACTACATTGCGGT
LOC_Os12g40190
Os.27677.1.S1_at--753--2771Chr12:24839349..24839373 (25 bp)
AAGAGCGTATTCCAGTCGTTCACGG
LOC_Os12g40190
Os.27677.1.S1_at--904--8051Chr12:24839326..24839350 (25 bp)
GGAGCGGAAACTCTACGTGTCCTAC
LOC_Os12g40190
Os.27677.1.S1_at--145--1451Chr12:24839228..24839252 (25 bp)
AGAAGCCCGTGTTTGGGTCCAGCGA
LOC_Os12g40190
Os.27677.1.S1_at--9--10311Chr12:24839065..24839089 (25 bp)
TTTCCCCTTTTGTTGCCTAGCAAGA
LOC_Os12g40190
Os.27677.1.S1_at--652--6431Chr12:24839042..24839066 (25 bp)
GATCATCGGCTTGTATGGTTGTTTA
LOC_Os12g40190
Os.27677.1.S1_at--594--2791Chr12:24838992..24839016 (25 bp)
AAGAGGTCTGCCTGATTCTGATTCT
LOC_Os12g40190
Target Sequence 
TCGGCAAATCTCCTTTAACATCATGCGACTGGTTCAGCGACTTCACTCCCCTGGTAAGCCGCAATCTGATCAACGGCACC
AGCAAAAGCTCGCGGGGCAGCTCCACTGGCTCGACATTGGCGCAGATGGCGGGTCACTACATTGCGGTGAAGTTCAAGAG
CGTATTCCAGTCGTTCACGGAGCGGAAACTCTACGTGTCCTACGTGAACGCCCTGGACCAGGAGTCGGTCCGCTCCGCGA
TCCGCTATGGAAGGGAGATCATCAAGTGGGAAGACGAGAAGCCCGTGTTTGGGTCCAGCGAGACGACATACAGCGAGGAG
CCGAGCTCCTACTCTCACTGACCCCTCCTCCCTCAACAACATTTGCTTTTGAGGTGTAAATAGCTGTGAATGCATTTGCT
CTCCCAGCAACCTTTTTTCCTTTTAGAGTTTTCTCATTTTTTCCCCTTTTGTTGCCTAGCAAGATCATCGGCTTGTATGG
TTGTTTAGTTGTTTACAAGTAGGGTGAGATGCAAGAGGTCTGCCTGATTCTGATTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27677.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis