Browse Element(s) Details


OsAffx.28242.1.S1_at

Description tigr:9635.m00230
TID=OsAffx.28242.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0319011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03160OsAffx.16062.1.S1_at11/117+1226821..1236455Phospholipase A-2-activating protein, putative, expressed
LOC_Os07g03160OsAffx.16061.1.S1_at11/117+1226821..1236455Phospholipase A-2-activating protein, putative, expressed
LOC_Os07g03160Os.5896.1.S1_at11/117+1226821..1236455Phospholipase A-2-activating protein, putative, expressed
LOC_Os07g03170Os.56093.1.S1_at11/117+1238103..1238925expressed protein
LOC_Os07g03180Os.4624.1.S1_at11/117+1243744..1244547expressed protein
LOC_Os07g03190OsAffx.28242.1.S1_at11/117+1247236..1248366expressed protein
LOC_Os07g03200Os.12206.1.S1_at9/117+1253347..1253967Phytosulfokines 4 precursor, putative, expressed
LOC_Os07g03210OsAffx.28243.1.S1_at11/117+1258652..1263749hypothetical protein
LOC_Os07g03210OsAffx.22040.1.S1_x_at1/117+1258652..1263749hypothetical protein
LOC_Os07g03210OsAffx.23030.1.S1_s_at1/117+1258652..1263749hypothetical protein
LOC_Os07g03220OsAffx.28244.1.S1_at11/117+1266274..1266849bZIP transcription factor family protein, expressed
LOC_Os07g03230Os.48081.1.S1_at11/117+1272854..1277016Eukaryotic translation initiation factor 3 subunit 8, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28242.1.S1_at--838--1611Chr07:1247788..1247812 (25 bp)
AGCTGGGTCGAGGTCTTCACGGCCA
LOC_Os07g03190
OsAffx.28242.1.S1_at--167--7431Chr07:1247824..1247848 (25 bp)
GTGTTCATAGACAAGACCATCCACA
LOC_Os07g03190
OsAffx.28242.1.S1_at--440--2011Chr07:1247925..1247949 (25 bp)
ACTCTGCAATGCCTCCATGGAGACA
LOC_Os07g03190
OsAffx.28242.1.S1_at--286--2611Chr07:1248106..1248130 (25 bp)
AACCGGAGGCTCGTGCTGGATTTGA
LOC_Os07g03190
OsAffx.28242.1.S1_at--375--7611Chr07:1248137..1248161 (25 bp)
GGGCAACATTTGAGGCAGTGCGATC
LOC_Os07g03190
OsAffx.28242.1.S1_at--21--9151Chr07:1248155..1248179 (25 bp)
TGCGATCGTTTCTCGACTTTGTGAT
LOC_Os07g03190
OsAffx.28242.1.S1_at--538--10751Chr07:1248244..1248268 (25 bp)
TTGAGGCACATGAGCGAAAGGTCCA
LOC_Os07g03190
OsAffx.28242.1.S1_at--984--2891Chr07:1248261..1248285 (25 bp)
AAGGTCCATGGTTATCGCTGCAATC
LOC_Os07g03190
OsAffx.28242.1.S1_at--1004--4751Chr07:1248277..1248301 (25 bp)
GCTGCAATCTGCATAGCATTGTGCT
LOC_Os07g03190
OsAffx.28242.1.S1_at--849--31Chr07:1248294..1248318 (25 bp)
ATTGTGCTTGCATTTGTTGAACGGC
LOC_Os07g03190
OsAffx.28242.1.S1_at--805--8811Chr07:1248308..1248332 (25 bp)
TGTTGAACGGCGCATGGCTCATGAC
LOC_Os07g03190
Target Sequence 
AGCTGGGTCGAGGTCTTCACGGCCACCGCCGTGGGGGTGTTCATAGACAAGACCATCCACATCAACACCTACGACCAGCT
CTTCGCCGCCGCCACGAACCCCTCCTATGGCGCCAGGCTACAGCAGCTTCTCGTCGCACTCTGCAATGCCTCCATGGAGA
CACTGGTAAAAACATCCCATAGTGTACTATCTAACCCTAACCCCAATGCCAATTCCAATCAAAATGGTAGTAACAATGGT
AGTGGTAGTGGTAGTGGCAATGGTGGGGATGGGGAAGGATGGGTGGAGACGGTGTCGACCGTGCTTGCGGTGCCGAGCAA
CCGGAGGCTCGTGCTGGATTTGACTGGGAGGGCAACATTTGAGGCAGTGCGATCGTTTCTCGACTTTGTGATGTGGAGAC
TTCATGAAGGCGCGAGGGCTGGGGGTGATGCCGCGATTGGGGCTGGATTGTGTGCCTTGAGGCACATGAGCGAAAGGTCC
ATGGTTATCGCTGCAATCTGCATAGCATTGTGCTTGCATTTGTTGAACGGCGCATGGCTCATGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28242.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis