Browse Element(s) Details


OsAffx.28244.1.S1_at

Description tigr:9635.m00234
TID=OsAffx.28244.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=bZIP transcription factor, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0322011/11bZIP transcription factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03180Os.4624.1.S1_at11/117+1243744..1244547expressed protein
LOC_Os07g03190OsAffx.28242.1.S1_at11/117+1247236..1248366expressed protein
LOC_Os07g03200Os.12206.1.S1_at9/117+1253347..1253967Phytosulfokines 4 precursor, putative, expressed
LOC_Os07g03210OsAffx.28243.1.S1_at11/117+1258652..1263749hypothetical protein
LOC_Os07g03210OsAffx.22040.1.S1_x_at1/117+1258652..1263749hypothetical protein
LOC_Os07g03210OsAffx.23030.1.S1_s_at1/117+1258652..1263749hypothetical protein
LOC_Os07g03220OsAffx.28244.1.S1_at11/117+1266274..1266849bZIP transcription factor family protein, expressed
LOC_Os07g03230Os.48081.1.S1_at11/117+1272854..1277016Eukaryotic translation initiation factor 3 subunit 8, putative, expressed
LOC_Os07g03240Os.9753.1.S1_at11/117+1279706..1283371RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28244.1.S1_at--607--6711Chr07:1266342..1266366 (25 bp)
GTTCGGATACGATGGTGTTGCCTCG
LOC_Os07g03220
OsAffx.28244.1.S1_at--1139--3951Chr07:1266345..1266369 (25 bp)
CGGATACGATGGTGTTGCCTCGGAT
LOC_Os07g03220
OsAffx.28244.1.S1_at--863--6471Chr07:1266347..1266371 (25 bp)
GATACGATGGTGTTGCCTCGGATGC
LOC_Os07g03220
OsAffx.28244.1.S1_at--1080--311Chr07:1266348..1266372 (25 bp)
ATACGATGGTGTTGCCTCGGATGCG
LOC_Os07g03220
OsAffx.28244.1.S1_at--729--811Chr07:1266353..1266377 (25 bp)
ATGGTGTTGCCTCGGATGCGGCCGC
LOC_Os07g03220
OsAffx.28244.1.S1_at--940--10811Chr07:1266382..1266406 (25 bp)
TTGTCGCCGGTGGTAGGTGCCGGCG
LOC_Os07g03220
OsAffx.28244.1.S1_at--655--971Chr07:1266508..1266532 (25 bp)
AGGAGGAAGATCTCGAACCGGGAGT
LOC_Os07g03220
OsAffx.28244.1.S1_at--403--1831Chr07:1266734..1266758 (25 bp)
ACGCCGCCGTGCTGATAGGGCTGTC
LOC_Os07g03220
OsAffx.28244.1.S1_at--125--4171Chr07:1266738..1266762 (25 bp)
CGCCGTGCTGATAGGGCTGTCCCGC
LOC_Os07g03220
OsAffx.28244.1.S1_at--994--9111Chr07:1266743..1266767 (25 bp)
TGCTGATAGGGCTGTCCCGCCTCCT
LOC_Os07g03220
OsAffx.28244.1.S1_at--1158--8811Chr07:1266746..1266770 (25 bp)
TGATAGGGCTGTCCCGCCTCCTACG
LOC_Os07g03220
Target Sequence 
GTTCGGATACGATGGTGTTGCCTCGGATGCGGCCGCCGGCTTGTCGCCGGTGGTAGGTGCCGGCGATGGGAGTGGTGGTG
GTGGTGATGTGTTGTTGTACTGTGACGGCGGAGGCGGCGGCGGCGGCGGCGGCGAGGACGGCGAGGAGGAGAGGCGGCGG
CGGCTGAGGAGGAAGATCTCGAACCGGGAGTCGGCGCGGCGGTCGCGGGCGCGGAGGCGGCAGCGGGTGGAGGAGCTGGA
GCGCGCCGCGGACGAGCTCCGCGCCGAGCGGCGCGCGCTGGCGTCGAGGCTGGACGCCACGGCGCGGCGGGCGCTCGCCG
TGCGCGGCGCGAACGCGCGGCACCACGCCGAGGCGGGCGTGCTCCGGCGCCGCCTCGGCGAGGCGCAGCGCAACGCCGCC
GTGCTGATAGGGCTGTCCCGCCTCCTACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28244.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis