Browse Element(s) Details


Os.5896.1.S1_at

Description gb:CB679601
DB_XREF= gi:29683326
DB_XREF=OSJNEf03E19.r
CLONE=OSJNEf03E19
TID=Os.5896.1
CNT=10
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.5896 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_566620.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0316011/11Phospholipase A-2-activating protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03140NANA7+1200894..1204643ternary complex factor MIP1, putative, expressed
LOC_Os07g03150OsAffx.16060.1.S1_at11/117+1212157..1216052f13j11 PRLI-interacting factor G, putative, expressed
LOC_Os07g03160OsAffx.16062.1.S1_at11/117+1226821..1236455Phospholipase A-2-activating protein, putative, expressed
LOC_Os07g03160OsAffx.16061.1.S1_at11/117+1226821..1236455Phospholipase A-2-activating protein, putative, expressed
LOC_Os07g03160Os.5896.1.S1_at11/117+1226821..1236455Phospholipase A-2-activating protein, putative, expressed
LOC_Os07g03170Os.56093.1.S1_at11/117+1238103..1238925expressed protein
LOC_Os07g03180Os.4624.1.S1_at11/117+1243744..1244547expressed protein
LOC_Os07g03190OsAffx.28242.1.S1_at11/117+1247236..1248366expressed protein
LOC_Os07g03200Os.12206.1.S1_at9/117+1253347..1253967Phytosulfokines 4 precursor, putative, expressed
LOC_Os07g03210OsAffx.28243.1.S1_at11/117+1258652..1263749hypothetical protein
LOC_Os07g03210OsAffx.22040.1.S1_x_at1/117+1258652..1263749hypothetical protein
LOC_Os07g03210OsAffx.23030.1.S1_s_at1/117+1258652..1263749hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007186biological_processG-protein coupled receptor protein signaling pathway
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5896.1.S1_at--826--491Chr07:1227286..1227668 (25 bp)
ATCGGCTCTCTCATGTTGAATGGCC
LOC_Os07g03160
Os.5896.1.S1_at--875--2751Chr07:1227134..1227158 (25 bp)
AAGACTCGCAGACGGTTGGTAGTAC
LOC_Os07g03160
Os.5896.1.S1_at--894--4591Chr07:1227092..1227116 (25 bp)
GCGACATTGTTCATGATACTGCTCA
LOC_Os07g03160
Os.5896.1.S1_at--301--3491Chr07:1227059..1227083 (25 bp)
CATGGAGCCGTCACTCGTGCAGGGA
LOC_Os07g03160
Os.5896.1.S1_at--593--4991Chr07:1227033..1227057 (25 bp)
GCAGTTTAGTGTTTAGCCCGTGCAC
LOC_Os07g03160
Os.5896.1.S1_at--103--6491Chr07:1226988..1227012 (25 bp)
GTAGGGTCAGGTTTGCAACTCGGTT
LOC_Os07g03160
Os.5896.1.S1_at--421--9391Chr07:1226961..1226985 (25 bp)
TCGTTGCGCCTTCTTGTAACAAACA
LOC_Os07g03160
Os.5896.1.S1_at--943--6791Chr07:1226930..1226954 (25 bp)
GTTTTTGAGCTTGAATCACCCGGCC
LOC_Os07g03160
Os.5896.1.S1_at--880--351Chr07:1226916..1226940 (25 bp)
ATCACCCGGCCTGAGCAAAAGGTTT
LOC_Os07g03160
Os.5896.1.S1_at--484--4491Chr07:1226883..1226907 (25 bp)
GCCGATGTTTTTACGTGGGTTTATG
LOC_Os07g03160
Os.5896.1.S1_at--554--6491Chr07:1226854..1226878 (25 bp)
GATAGCTGCACCTATACACTTTTAT
LOC_Os07g03160
Target Sequence 
ATCGGCTCTCTCATGTTGAATGGCCTTGTGAAGTCCATTGCTCTTGATCTTGATGTTAAGAGTGTTGCGAACACCGCAAG
AGCTTCAAAGGACTCGAAGATCGCTGAAGTTGGAGCCGACATCGAGCTTCTGACAAGATGATAAGATGGCCGAAGACTCG
CAGACGGTTGGTAGTACGTCCCCCCTTGCTGGAGGCGACATTGTTCATGATACTGCTCATCAGTCACCATGGAGCCGTCA
CTCGTGCAGGGAGGCAGTTTAGTGTTTAGCCCGTGCACCTGGTGGCGCCGGTCGTGGGGTAGGGTCAGGTTTGCAACTCG
GTTGCTCGTTGCGCCTTCTTGTAACAAACAGCTTGTGTTTTTGAGCTTGAATCACCCGGCCTGAGCAAAAGGTTTGTTTT
TAAGCCGATGTTTTTACGTGGGTTTATGATTAGATAGCTGCACCTATACACTTTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5896.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis