Browse Element(s) Details


Os.40003.1.S1_x_at

Description gb:CF316493
DB_XREF= gi:33688254
DB_XREF=HD--05-M21.b1
CLONE=HD--05-M21
TID=Os.40003.1
CNT=11
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.40003 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome1, At1g09310 (P0022B05.25), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0292011/11expressed protein
LOC_Os07g028501/11expressed protein
LOC_Os07g029001/11hypothetical protein
LOC_Os07g029401/11expressed protein
LOC_Os07g026901/11expressed protein
LOC_Os07g027001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02840NANA7+1062506..1064009hypothetical protein
LOC_Os07g02850Os.46022.1.S1_at11/117+1065317..1066167expressed protein
LOC_Os07g02850Os.46022.1.S1_x_at11/117+1065317..1066167expressed protein
LOC_Os07g02850Os.23172.1.S1_x_at4/117+1065317..1066167expressed protein
LOC_Os07g02850Os.40003.1.S1_x_at1/117+1065317..1066167expressed protein
LOC_Os07g02860OsAffx.28241.1.S1_at11/117+1067613..1069134hypothetical protein
LOC_Os07g02870OsAffx.5189.1.S1_at11/117+1074925..1075645hypothetical protein
LOC_Os07g02870Os.23172.1.S1_x_at1/117+1074925..1075645hypothetical protein
LOC_Os07g02880Os.36607.1.S1_x_at11/117+1079262..1080033expressed protein
LOC_Os07g02880Os.23172.1.S1_x_at1/117+1079262..1080033expressed protein
LOC_Os07g02890Os.40458.1.S1_at11/117+1081104..1082724F-box domain containing protein, expressed
LOC_Os07g02900Os.23172.1.S1_x_at3/117+1084101..1084529hypothetical protein
LOC_Os07g02900Os.46022.1.S1_x_at1/117+1084101..1084529hypothetical protein
LOC_Os07g02900Os.40003.1.S1_x_at1/117+1084101..1084529hypothetical protein
LOC_Os07g02910Os.31486.1.S1_at11/117+1085689..1087509F-box domain containing protein, expressed
LOC_Os07g02920Os.40003.1.S1_at11/117+1087792..1088466expressed protein
LOC_Os07g02920Os.40003.1.S1_x_at11/117+1087792..1088466expressed protein
LOC_Os07g02920Os.23172.1.S1_x_at3/117+1087792..1088466expressed protein
LOC_Os07g02920Os.46022.1.S1_x_at1/117+1087792..1088466expressed protein
LOC_Os07g02920Os.36607.1.S1_x_at1/117+1087792..1088466expressed protein
LOC_Os07g02930NANA7+1091541..1093053F-box domain containing protein
LOC_Os07g02940Os.23172.1.S1_x_at11/117+1093357..1094206expressed protein
LOC_Os07g02940Os.46022.1.S1_x_at2/117+1093357..1094206expressed protein
LOC_Os07g02940Os.40003.1.S1_x_at1/117+1093357..1094206expressed protein
LOC_Os07g02940Os.36607.1.S1_x_at1/117+1093357..1094206expressed protein
LOC_Os07g02950Os.54108.1.S1_at11/117+1094680..1099996expressed protein
LOC_Os07g02960Os.32682.1.S1_at11/117+1100153..1103688expressed protein
LOC_Os07g02960Os.32682.2.S1_x_at11/117+1100153..1103688expressed protein
LOC_Os07g02970Os.18570.1.S1_at11/117+1105139..1107130expressed protein
LOC_Os07g02980Os.33868.1.S1_at7/117+1108798..1110321hypothetical protein
LOC_Os07g02990Os.23216.2.S1_x_at11/117+1112268..1114597expressed protein
LOC_Os07g02990Os.23216.1.S1_at11/117+1112268..1114597expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40003.1.S1_x_at--736--8031Chr07:1088233..1088257 (25 bp)
GGAGTTCGGCTACAACAGGGACACT
LOC_Os07g02920
Os.40003.1.S1_x_at--715--8196Chr07:1065610..1065634 (25 bp)
GGAAGAAGAAGATCGAGCACACCTT
LOC_Os07g02850
Os.40003.1.S1_x_at--996--2711Chr07:1088151..1088175 (25 bp)
AAGCAGACCGTTTCCTACGCCGGCG
LOC_Os07g02920
Os.40003.1.S1_x_at--179--2611Chr07:1087990..1088014 (25 bp)
AACCGGGCTCTCTGATAACTTCGAT
LOC_Os07g02920
Os.40003.1.S1_x_at--1123--2511Chr07:1087974..1087998 (25 bp)
AACTTCGATGCCACTGCTTTTGCTC
LOC_Os07g02920
Os.40003.1.S1_x_at--232--5571Chr07:1087931..1087955 (25 bp)
GAAAGACCATAATCTCAACTGTGTA
LOC_Os07g02920
Os.40003.1.S1_x_at--1069--2351Chr07:1087898..1087922 (25 bp)
AAAGCCACTATCTTAGGTCACCATG
LOC_Os07g02920
Os.40003.1.S1_x_at--327--431Chr07:1087889..1087913 (25 bp)
ATCTTAGGTCACCATGTACTTACTA
LOC_Os07g02920
Os.40003.1.S1_x_at--854--751Chr07:1087876..1087900 (25 bp)
ATGTACTTACTATTATCTCTTTTGT
LOC_Os07g02920
Os.40003.1.S1_x_at--812--3271Chr07:1087847..1087871 (25 bp)
CAAACATTCGAGTATAGTCCTATAT
LOC_Os07g02920
Os.40003.1.S1_x_at--1060--10191Chr07:1087827..1087851 (25 bp)
TATATATATTTGTTCCCTTTCATCA
LOC_Os07g02920
Target Sequence 
GGAGTTCGGCTACAACAGGGACACTGGATTCATGTGGATGGTGCAGAGGAAGAAGAAGATCGAGCACACCTTCAAGAANA
TCAAGCAGACCGTTTCCTACGCCGGCGAGGTCACGGCGTTCGTCGAGAAGGGGAAGCTGAAGAAGATCACCGGCGTGAAG
ACCAAGGAGCTGCTGCTCTGGCTCAGCGTCGTCGAGGTGTACGTCGCCGAGGCCTCGCCGGAGAAGGTCACCTTCAAGAC
TGGAACCGGGCTCTCTGATAACTTCGATGCCACTGCTTTTGCTCTCGGGGAGTAGAAATTATGAAAGACCATAATCTCAA
CTGTGTAAAAGGATTAAAGCCACTATCTTAGGTCACCATGTACTTACTATTATCTCTTTTGTATTACAAACATTCGAGTA
TAGTCCTATATATATTTGTTCCCTTTCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40003.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis