Browse Element(s) Details


Os.40458.1.S1_at

Description gb:NM_194191.1
DB_XREF= gi:34915419
GEN=P0022B05.22
TID=Os.40458.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.40458 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST C98814(E3124)~similar to Oryza sativa chromosome10, OJ1014_G12~unknown protein (P0022B05.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) contains EST C98814(E3124)~similar to Oryza sativa chromosome10, OJ1014_G12~unknown protein (P0022B05.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0289011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02810Os.7637.1.S1_at11/117+1053441..1056428L-ascorbate oxidase homolog precursor, putative, expressed
LOC_Os07g02820OsAffx.28240.1.S1_at11/117+1059647..1060707expressed protein
LOC_Os07g02840NANA7+1062506..1064009hypothetical protein
LOC_Os07g02850Os.46022.1.S1_at11/117+1065317..1066167expressed protein
LOC_Os07g02850Os.46022.1.S1_x_at11/117+1065317..1066167expressed protein
LOC_Os07g02850Os.23172.1.S1_x_at4/117+1065317..1066167expressed protein
LOC_Os07g02850Os.40003.1.S1_x_at1/117+1065317..1066167expressed protein
LOC_Os07g02860OsAffx.28241.1.S1_at11/117+1067613..1069134hypothetical protein
LOC_Os07g02870OsAffx.5189.1.S1_at11/117+1074925..1075645hypothetical protein
LOC_Os07g02870Os.23172.1.S1_x_at1/117+1074925..1075645hypothetical protein
LOC_Os07g02880Os.36607.1.S1_x_at11/117+1079262..1080033expressed protein
LOC_Os07g02880Os.23172.1.S1_x_at1/117+1079262..1080033expressed protein
LOC_Os07g02890Os.40458.1.S1_at11/117+1081104..1082724F-box domain containing protein, expressed
LOC_Os07g02900Os.23172.1.S1_x_at3/117+1084101..1084529hypothetical protein
LOC_Os07g02900Os.46022.1.S1_x_at1/117+1084101..1084529hypothetical protein
LOC_Os07g02900Os.40003.1.S1_x_at1/117+1084101..1084529hypothetical protein
LOC_Os07g02910Os.31486.1.S1_at11/117+1085689..1087509F-box domain containing protein, expressed
LOC_Os07g02920Os.40003.1.S1_at11/117+1087792..1088466expressed protein
LOC_Os07g02920Os.40003.1.S1_x_at11/117+1087792..1088466expressed protein
LOC_Os07g02920Os.23172.1.S1_x_at3/117+1087792..1088466expressed protein
LOC_Os07g02920Os.46022.1.S1_x_at1/117+1087792..1088466expressed protein
LOC_Os07g02920Os.36607.1.S1_x_at1/117+1087792..1088466expressed protein
LOC_Os07g02930NANA7+1091541..1093053F-box domain containing protein
LOC_Os07g02940Os.23172.1.S1_x_at11/117+1093357..1094206expressed protein
LOC_Os07g02940Os.46022.1.S1_x_at2/117+1093357..1094206expressed protein
LOC_Os07g02940Os.40003.1.S1_x_at1/117+1093357..1094206expressed protein
LOC_Os07g02940Os.36607.1.S1_x_at1/117+1093357..1094206expressed protein
LOC_Os07g02950Os.54108.1.S1_at11/117+1094680..1099996expressed protein
LOC_Os07g02960Os.32682.1.S1_at11/117+1100153..1103688expressed protein
LOC_Os07g02960Os.32682.2.S1_x_at11/117+1100153..1103688expressed protein
LOC_Os07g02970Os.18570.1.S1_at11/117+1105139..1107130expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40458.1.S1_at--814--6971Chr07:1082176..1082200 (25 bp)
GTACCATTACTCATGGGCGTGCTTG
LOC_Os07g02890
Os.40458.1.S1_at--344--3811Chr07:1082125..1082149 (25 bp)
CTCCAAGGTCTCAATCGTGTTCGAT
LOC_Os07g02890
Os.40458.1.S1_at--1130--6571Chr07:1082103..1082127 (25 bp)
GATTCCTATGTCGAGATGTTGCCCA
LOC_Os07g02890
Os.40458.1.S1_at--368--4471Chr07:1082078..1082102 (25 bp)
GCCTCCTTGTCGAAGATATGCTCTT
LOC_Os07g02890
Os.40458.1.S1_at--953--6591Chr07:1081990..1082014 (25 bp)
GATTGAGCCGCCATTGTGGGATGAT
LOC_Os07g02890
Os.40458.1.S1_at--1064--791Chr07:1081934..1081958 (25 bp)
ATGGTGGACTGGGATTTGCTACTAT
LOC_Os07g02890
Os.40458.1.S1_at--573--191Chr07:1081921..1081945 (25 bp)
ATTTGCTACTATGGAAACCCGCGGC
LOC_Os07g02890
Os.40458.1.S1_at--434--10851Chr07:1081824..1081848 (25 bp)
TTGGAAATGCTGATCCCGGTGGATA
LOC_Os07g02890
Os.40458.1.S1_at--297--2631Chr07:1081753..1081777 (25 bp)
AACCATTTTCGTGTCATCGGATGTC
LOC_Os07g02890
Os.40458.1.S1_at--122--8371Chr07:1081728..1081752 (25 bp)
GGCGTGTTCGCAATTGGGCTCAAAT
LOC_Os07g02890
Os.40458.1.S1_at--692--10831Chr07:1081685..1081709 (25 bp)
TTGGTGACAGCAGGCCCTACTATTC
LOC_Os07g02890
Target Sequence 
GTACCATTACTCATGGGCGTGCTTGTACTCGTCAGAGACTGGAGAGTGGAGCTCCAAGGTCTCAATCGTGTTCGATTCCT
ATGTCGAGATGTTGCCCAGCCTCCTTGTCGAAGATATGCTCTTCTTCATCTGTGAGAATGGCATTAGAATTCTGGGGTAT
GACATTGGCAGGCATGAGCTTTGGGAGATTGAGCCGCCATTGTGGGATGATTACCAAGGGGGAACCCTGATGACAGCGGA
GGATGGTGGACTGGGATTTGCTACTATGGAAACCCGCGGCCTCGTGCTGTGGTCGTGGTATGTGGATGATGATGATGGGA
TTGCAGATTGGGAACAACTCAGGGTAATCAAGTTGGAAATGCTGATCCCGGTGGATAACCCCTCAGTCTCACTTGATCTG
GTTGGTTTCATAGAAGGCACACAAACCATTTTCGTGTCATCGGATGTCGGCGTGTTCGCAATTGGGCTCAAATCAGGCCA
AGTGAAGAAGGTTGGTGACAGCAGGCCCTACTATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40458.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis