Browse Element(s) Details


Os.7637.1.S1_at

Description gb:AK102922.1
DB_XREF= gi:32988131
TID=Os.7637.1
CNT=14
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.7637 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs D23897(R0531),AU181257(C11117),AU101619(R0531), AU181258(C11117)~pectinesterase-like protein (P0022B05.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033114C13, full insert sequence.
FL= gb:AK102922.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0281011/11L-ascorbate oxidase homolog precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02800Os.10333.1.S1_at11/117+1044316..1046349myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os07g02810Os.7637.1.S1_at11/117+1053441..1056428L-ascorbate oxidase homolog precursor, putative, expressed
LOC_Os07g02820OsAffx.28240.1.S1_at11/117+1059647..1060707expressed protein
LOC_Os07g02840NANA7+1062506..1064009hypothetical protein
LOC_Os07g02850Os.46022.1.S1_at11/117+1065317..1066167expressed protein
LOC_Os07g02850Os.46022.1.S1_x_at11/117+1065317..1066167expressed protein
LOC_Os07g02850Os.23172.1.S1_x_at4/117+1065317..1066167expressed protein
LOC_Os07g02850Os.40003.1.S1_x_at1/117+1065317..1066167expressed protein
LOC_Os07g02860OsAffx.28241.1.S1_at11/117+1067613..1069134hypothetical protein
LOC_Os07g02870OsAffx.5189.1.S1_at11/117+1074925..1075645hypothetical protein
LOC_Os07g02870Os.23172.1.S1_x_at1/117+1074925..1075645hypothetical protein
LOC_Os07g02880Os.36607.1.S1_x_at11/117+1079262..1080033expressed protein
LOC_Os07g02880Os.23172.1.S1_x_at1/117+1079262..1080033expressed protein
LOC_Os07g02890Os.40458.1.S1_at11/117+1081104..1082724F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005507molecular_functioncopper ion binding
GO:0030599molecular_functionpectinesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7637.1.S1_at--1069--5231Chr07:1055425..1055449 (25 bp)
GAATCAGCGGACAACCTACAACTTG
LOC_Os07g02810
Os.7637.1.S1_at--711--31Chr07:1055465..1055927 (25 bp)
AGGCATACAGTTCAGGTTTACCCGA
LOC_Os07g02810
Os.7637.1.S1_at--473--6251Chr07:1055931..1055955 (25 bp)
GATGGTCGGCAATCTTGGTGTCATT
LOC_Os07g02810
Os.7637.1.S1_at--147--2111Chr07:1056024..1056048 (25 bp)
ACATGAGAGTGTGGACGCCGCAGCA
LOC_Os07g02810
Os.7637.1.S1_at--577--2751Chr07:1056059..1056083 (25 bp)
AATGAGTACAGTATCCCGACCAACG
LOC_Os07g02810
Os.7637.1.S1_at--527--2611Chr07:1056080..1056104 (25 bp)
AACGCCATACTCTGCGGTAGAGCTG
LOC_Os07g02810
Os.7637.1.S1_at--504--6051Chr07:1056146..1056170 (25 bp)
GAGTTGCATAGTTCGATCCATCCTT
LOC_Os07g02810
Os.7637.1.S1_at--315--571Chr07:1056161..1056185 (25 bp)
ATCCATCCTTCGTCGTTTGGTATAT
LOC_Os07g02810
Os.7637.1.S1_at--627--9511Chr07:1056318..1056342 (25 bp)
TCTCTTGAGTTTGTAGCCTGTGGAC
LOC_Os07g02810
Os.7637.1.S1_at--675--2951Chr07:1056343..1056367 (25 bp)
AAGGCCTCAGGCTTAATGGTGCAGA
LOC_Os07g02810
Os.7637.1.S1_at--1107--1331Chr07:1056365..1056389 (25 bp)
AGAGTGCTCTGTTTCTGATGCCGCA
LOC_Os07g02810
Target Sequence 
GAATCAGCGGACAACCTACAACTTGGTTGATGCGCAAGCGAGGCATACAGTTCAGGTTTACCCGAATGGATGGTCGGCAA
TCTTGGTGTCATTGGACAACCAGGGGATGTGGAACCTGAGGTCGGCGAACTGGGACCGGCAATACCTCGGCCAGCAGCTG
TACATGAGAGTGTGGACGCCGCAGCAGAGCTTCTCCAATGAGTACAGTATCCCGACCAACGCCATACTCTGCGGTAGAGC
TGCCGGCCTTGGACACTGAGGAAGATGATGAAGAAGAAATTCAGAGTTGCATAGTTCGATCCATCCTTCGTCGTTTGGTA
TATGTCTAGTAGAATAAGTCATACTACTACTACTATAGGTGAAAGTGAAGATGAGAATTCAGAATTACGATTTCGGATAT
ATGTTTGTTGTAGCTAAAACTGATGTGCTATTCTTTGATCATATGTCAGTGTTTTTCTCTTGAGTTTGTAGCCTGTGGAC
AAGGCCTCAGGCTTAATGGTGCAGAGTGCTCTGTTTCTGATGCCGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7637.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis