Browse Element(s) Details


OsAffx.28241.1.S1_at

Description gb:NM_194188.1
DB_XREF= gi:34915413
GEN=P0022B05.18
TID=OsAffx.28241.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~similar to Oryza sativa chromosome10, OSJNBa0089D15.10 (P0022B05.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0286011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02800Os.10333.1.S1_at11/117+1044316..1046349myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os07g02810Os.7637.1.S1_at11/117+1053441..1056428L-ascorbate oxidase homolog precursor, putative, expressed
LOC_Os07g02820OsAffx.28240.1.S1_at11/117+1059647..1060707expressed protein
LOC_Os07g02840NANA7+1062506..1064009hypothetical protein
LOC_Os07g02850Os.46022.1.S1_at11/117+1065317..1066167expressed protein
LOC_Os07g02850Os.46022.1.S1_x_at11/117+1065317..1066167expressed protein
LOC_Os07g02850Os.23172.1.S1_x_at4/117+1065317..1066167expressed protein
LOC_Os07g02850Os.40003.1.S1_x_at1/117+1065317..1066167expressed protein
LOC_Os07g02860OsAffx.28241.1.S1_at11/117+1067613..1069134hypothetical protein
LOC_Os07g02870OsAffx.5189.1.S1_at11/117+1074925..1075645hypothetical protein
LOC_Os07g02870Os.23172.1.S1_x_at1/117+1074925..1075645hypothetical protein
LOC_Os07g02880Os.36607.1.S1_x_at11/117+1079262..1080033expressed protein
LOC_Os07g02880Os.23172.1.S1_x_at1/117+1079262..1080033expressed protein
LOC_Os07g02890Os.40458.1.S1_at11/117+1081104..1082724F-box domain containing protein, expressed
LOC_Os07g02900Os.23172.1.S1_x_at3/117+1084101..1084529hypothetical protein
LOC_Os07g02900Os.46022.1.S1_x_at1/117+1084101..1084529hypothetical protein
LOC_Os07g02900Os.40003.1.S1_x_at1/117+1084101..1084529hypothetical protein
LOC_Os07g02910Os.31486.1.S1_at11/117+1085689..1087509F-box domain containing protein, expressed
LOC_Os07g02920Os.40003.1.S1_at11/117+1087792..1088466expressed protein
LOC_Os07g02920Os.40003.1.S1_x_at11/117+1087792..1088466expressed protein
LOC_Os07g02920Os.23172.1.S1_x_at3/117+1087792..1088466expressed protein
LOC_Os07g02920Os.46022.1.S1_x_at1/117+1087792..1088466expressed protein
LOC_Os07g02920Os.36607.1.S1_x_at1/117+1087792..1088466expressed protein
LOC_Os07g02930NANA7+1091541..1093053F-box domain containing protein
LOC_Os07g02940Os.23172.1.S1_x_at11/117+1093357..1094206expressed protein
LOC_Os07g02940Os.46022.1.S1_x_at2/117+1093357..1094206expressed protein
LOC_Os07g02940Os.40003.1.S1_x_at1/117+1093357..1094206expressed protein
LOC_Os07g02940Os.36607.1.S1_x_at1/117+1093357..1094206expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28241.1.S1_at--535--7451Chr07:1068954..1068978 (25 bp)
GTGTCGGGCGAAGCTCTAGTTCCAA
LOC_Os07g02860
OsAffx.28241.1.S1_at--508--2531Chr07:1068797..1068955 (25 bp)
AACTCCGGGCGACAGTGTTCGACTA
LOC_Os07g02860
OsAffx.28241.1.S1_at--670--6711Chr07:1068781..1068805 (25 bp)
GTTCGACTAGGCATGTCATACCGCG
LOC_Os07g02860
OsAffx.28241.1.S1_at--157--8051Chr07:1068737..1068761 (25 bp)
GGAGTTGTTCGACGCCATCTTCACT
LOC_Os07g02860
OsAffx.28241.1.S1_at--1018--9971Chr07:1068710..1068734 (25 bp)
TACCATCCTTTCCAAAACTGTGCAG
LOC_Os07g02860
OsAffx.28241.1.S1_at--338--1311Chr07:1068669..1068693 (25 bp)
AGATGATGGTCTTCGGCAGTGCCAA
LOC_Os07g02860
OsAffx.28241.1.S1_at--957--9191Chr07:1068650..1068674 (25 bp)
TGCCAACTTCATTCTTCGACCGGAA
LOC_Os07g02860
OsAffx.28241.1.S1_at--794--8211Chr07:1067810..1067834 (25 bp)
GGCAAGAACTATTCGCCAGGTTACA
LOC_Os07g02860
OsAffx.28241.1.S1_at--770--1011Chr07:1067793..1067817 (25 bp)
AGGTTACACCCCAAGTCCGGATCAT
LOC_Os07g02860
OsAffx.28241.1.S1_at--945--6431Chr07:1067774..1067798 (25 bp)
GATCATCCGGAAACTGGCGTGGCCT
LOC_Os07g02860
OsAffx.28241.1.S1_at--290--7611Chr07:1067713..1067737 (25 bp)
GGGCAAAGACCCTAGCTGCTATAGT
LOC_Os07g02860
Target Sequence 
GTGTCGGGCGAAGCTCTAGTTCCAACTCCGGGCGACAGTGTTCGACTAGGCATGTCATACCGCGCTGGCTTGGCCCCAAC
CGCGGAGTTGTTCGACGCCATCTTCACTGCTACCATCCTTTCCAAAACTGTGCAGACGGCTGCTGGGCCGAAGATGATGG
TCTTCGGCAGTGCCAACTTCATTCTTCGACCGGAACGATCCACCGCCCCTTCACCTGCTGAATCGGATGCGAACGATGAG
GAAGAGGAGGACGAGAGGGATGAGGAGGAGGAGGAGGAGGTGGTGGTGGTGGAGGAAGCGGCCGAAGAGGATACGGAGGG
CAAGAACTATTCGCCAGGTTACACCCCAAGTCCGGATCATCCGGAAACTGGCGTGGCCTCCAGCTCGTCACCCCTTCGCC
AGAAAGACCTAGAGGGGGCAAAGACCCTAGCTGCTATAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28241.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis