Browse Element(s) Details


Os.31486.1.S1_at

Description gb:AK107254.1
DB_XREF= gi:32992463
TID=Os.31486.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31486 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Oryza sativa chromosome1, OJ1014_G12.29 (P0022B05.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-125-G06, full insert sequence.
FL= gb:AK107254.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0291011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02820OsAffx.28240.1.S1_at11/117+1059647..1060707expressed protein
LOC_Os07g02840NANA7+1062506..1064009hypothetical protein
LOC_Os07g02850Os.46022.1.S1_at11/117+1065317..1066167expressed protein
LOC_Os07g02850Os.46022.1.S1_x_at11/117+1065317..1066167expressed protein
LOC_Os07g02850Os.23172.1.S1_x_at4/117+1065317..1066167expressed protein
LOC_Os07g02850Os.40003.1.S1_x_at1/117+1065317..1066167expressed protein
LOC_Os07g02860OsAffx.28241.1.S1_at11/117+1067613..1069134hypothetical protein
LOC_Os07g02870OsAffx.5189.1.S1_at11/117+1074925..1075645hypothetical protein
LOC_Os07g02870Os.23172.1.S1_x_at1/117+1074925..1075645hypothetical protein
LOC_Os07g02880Os.36607.1.S1_x_at11/117+1079262..1080033expressed protein
LOC_Os07g02880Os.23172.1.S1_x_at1/117+1079262..1080033expressed protein
LOC_Os07g02890Os.40458.1.S1_at11/117+1081104..1082724F-box domain containing protein, expressed
LOC_Os07g02900Os.23172.1.S1_x_at3/117+1084101..1084529hypothetical protein
LOC_Os07g02900Os.46022.1.S1_x_at1/117+1084101..1084529hypothetical protein
LOC_Os07g02900Os.40003.1.S1_x_at1/117+1084101..1084529hypothetical protein
LOC_Os07g02910Os.31486.1.S1_at11/117+1085689..1087509F-box domain containing protein, expressed
LOC_Os07g02920Os.40003.1.S1_at11/117+1087792..1088466expressed protein
LOC_Os07g02920Os.40003.1.S1_x_at11/117+1087792..1088466expressed protein
LOC_Os07g02920Os.23172.1.S1_x_at3/117+1087792..1088466expressed protein
LOC_Os07g02920Os.46022.1.S1_x_at1/117+1087792..1088466expressed protein
LOC_Os07g02920Os.36607.1.S1_x_at1/117+1087792..1088466expressed protein
LOC_Os07g02930NANA7+1091541..1093053F-box domain containing protein
LOC_Os07g02940Os.23172.1.S1_x_at11/117+1093357..1094206expressed protein
LOC_Os07g02940Os.46022.1.S1_x_at2/117+1093357..1094206expressed protein
LOC_Os07g02940Os.40003.1.S1_x_at1/117+1093357..1094206expressed protein
LOC_Os07g02940Os.36607.1.S1_x_at1/117+1093357..1094206expressed protein
LOC_Os07g02950Os.54108.1.S1_at11/117+1094680..1099996expressed protein
LOC_Os07g02960Os.32682.1.S1_at11/117+1100153..1103688expressed protein
LOC_Os07g02960Os.32682.2.S1_x_at11/117+1100153..1103688expressed protein
LOC_Os07g02970Os.18570.1.S1_at11/117+1105139..1107130expressed protein
LOC_Os07g02980Os.33868.1.S1_at7/117+1108798..1110321hypothetical protein
LOC_Os07g02990Os.23216.2.S1_x_at11/117+1112268..1114597expressed protein
LOC_Os07g02990Os.23216.1.S1_at11/117+1112268..1114597expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31486.1.S1_at--467--7871Chr07:1086528..1086552 (25 bp)
GGTTTCGCCGAAGGCGTGCATACCA
LOC_Os07g02910
Os.31486.1.S1_at--546--7331Chr07:1086513..1086537 (25 bp)
GTGCATACCATTTTCATCTCATCAG
LOC_Os07g02910
Os.31486.1.S1_at--68--7751Chr07:1086483..1086507 (25 bp)
GGTGTGTTCACAATTGAGCTCAAAT
LOC_Os07g02910
Os.31486.1.S1_at--265--8671Chr07:1086438..1086462 (25 bp)
TGTGAGGAGGGCTACTATACCGTCG
LOC_Os07g02910
Os.31486.1.S1_at--1019--8991Chr07:1085909..1085933 (25 bp)
TGAAGTGCAGTGACCCATCCATTAA
LOC_Os07g02910
Os.31486.1.S1_at--861--5811Chr07:1085898..1085922 (25 bp)
GACCCATCCATTAAGCTTCTGGTAT
LOC_Os07g02910
Os.31486.1.S1_at--761--5911Chr07:1085867..1085891 (25 bp)
GAGCTAGTCCTCTTATTATCTTTTA
LOC_Os07g02910
Os.31486.1.S1_at--1056--6011Chr07:1085820..1085844 (25 bp)
GAGAGTACTATGTGACCGTGCTCAG
LOC_Os07g02910
Os.31486.1.S1_at--842--1411Chr07:1085761..1085785 (25 bp)
AGAAAGGATGGCTCACACAGTGAAC
LOC_Os07g02910
Os.31486.1.S1_at--942--6832Chr07:1085732..1085756 (25 bp)
GTTTCTTCTCATTTAACTGCTTATG
LOC_Os07g02910
Os.31486.1.S1_at--81--2551Chr07:1085718..1085742 (25 bp)
AACTGCTTATGATCGTTACCATGCA
LOC_Os07g02910
Target Sequence 
GGTTTCGCCGAAGGCGTGCATACCATTTTCATCTCATCAGAGATTGGTGTGTTCACAATTGAGCTCAAATCAGGCCAAGT
GAAGAAGCTGTGTGAGGAGGGCTACTATACCGTCGTCCCCTACATGAGCTTTTACACTTCAGATATTGCTATATGGAGGC
CGGAGGAACCAGCTGAAGACTGAAGTGCAGTGACCCATCCATTAAGCTTCTGGTATCTTACAGAGCTAGTCCTCTTATTA
TCTTTTAAGATGGGGAGTTGAAGTAAGAAGAGAGTACTATGTGACCGTGCTCAGNTAAGATGTTTGATTTCAGTTTGTAA
TGCAACTGAGAAAGGATGGCTCACACAGTGAACATTTGTTTCTTCTCATTTAACTGCTTATGATCGTTACCATGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31486.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis