Browse Element(s) Details


OsAffx.28240.1.S1_at

Description gb:NM_194183.1
DB_XREF= gi:34915403
TID=OsAffx.28240.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by FGENESH etc. (P0022B05.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0282011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02800Os.10333.1.S1_at11/117+1044316..1046349myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os07g02810Os.7637.1.S1_at11/117+1053441..1056428L-ascorbate oxidase homolog precursor, putative, expressed
LOC_Os07g02820OsAffx.28240.1.S1_at11/117+1059647..1060707expressed protein
LOC_Os07g02840NANA7+1062506..1064009hypothetical protein
LOC_Os07g02850Os.46022.1.S1_at11/117+1065317..1066167expressed protein
LOC_Os07g02850Os.46022.1.S1_x_at11/117+1065317..1066167expressed protein
LOC_Os07g02850Os.23172.1.S1_x_at4/117+1065317..1066167expressed protein
LOC_Os07g02850Os.40003.1.S1_x_at1/117+1065317..1066167expressed protein
LOC_Os07g02860OsAffx.28241.1.S1_at11/117+1067613..1069134hypothetical protein
LOC_Os07g02870OsAffx.5189.1.S1_at11/117+1074925..1075645hypothetical protein
LOC_Os07g02870Os.23172.1.S1_x_at1/117+1074925..1075645hypothetical protein
LOC_Os07g02880Os.36607.1.S1_x_at11/117+1079262..1080033expressed protein
LOC_Os07g02880Os.23172.1.S1_x_at1/117+1079262..1080033expressed protein
LOC_Os07g02890Os.40458.1.S1_at11/117+1081104..1082724F-box domain containing protein, expressed
LOC_Os07g02900Os.23172.1.S1_x_at3/117+1084101..1084529hypothetical protein
LOC_Os07g02900Os.46022.1.S1_x_at1/117+1084101..1084529hypothetical protein
LOC_Os07g02900Os.40003.1.S1_x_at1/117+1084101..1084529hypothetical protein
LOC_Os07g02910Os.31486.1.S1_at11/117+1085689..1087509F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28240.1.S1_at--674--8152Chr07:1060619..1060643 (25 bp)
GGAAAGAAACTCTAGCCCAAAGTGA
LOC_Os07g02820
OsAffx.28240.1.S1_at--243--10851Chr07:1060589..1060613 (25 bp)
TTGGTTATGCCCTTGAACAAAGTGA
LOC_Os07g02820
OsAffx.28240.1.S1_at--1075--9731Chr07:1060361..1060580 (25 bp)
TAACTAAATCTGTCCCGGGACCGCG
LOC_Os07g02820
OsAffx.28240.1.S1_at--566--3151Chr07:1060334..1060358 (25 bp)
AATTCCTCGTCATCTCTGAAGCAAC
LOC_Os07g02820
OsAffx.28240.1.S1_at--535--5351Chr07:1060285..1060309 (25 bp)
GAAGAGGTTCTTCTCCATGGAAAGG
LOC_Os07g02820
OsAffx.28240.1.S1_at--144--6371Chr07:1059802..1059826 (25 bp)
GATCCACGGAATGAGTTCTATGTTG
LOC_Os07g02820
OsAffx.28240.1.S1_at--463--1191Chr07:1059773..1059797 (25 bp)
AGTAGCAACTGCGATATCTCTTTGG
LOC_Os07g02820
OsAffx.28240.1.S1_at--210--4051Chr07:1059762..1059786 (25 bp)
CGATATCTCTTTGGCTGATGTCAAG
LOC_Os07g02820
OsAffx.28240.1.S1_at--1128--5591Chr07:1059738..1059762 (25 bp)
GACAATATCGAAGCCTTGGCGACCC
LOC_Os07g02820
OsAffx.28240.1.S1_at--797--3311Chr07:1059713..1059737 (25 bp)
CACATTTCCTGGTGGCAGCATGAAA
LOC_Os07g02820
OsAffx.28240.1.S1_at--548--7851Chr07:1059680..1059704 (25 bp)
GGCTTGGAAGCGTGTTTCTAAACTT
LOC_Os07g02820
Target Sequence 
GGAAAGAAACTCTAGCCCAAAGTGAAAAAATTGGTTATGCCCTTGAACAAAGTGAAAATTTGGTAACTAAATCTGTCCCG
GGACCGCGACAATTCCTCGTCATCTCTGAAGCAACCGAGGGTGTGAAGTGGGCAGGGCAGAAGAGGTTCTTCTCCATGGA
AAGGAATGCTAATGGTTTTAAGCTTATGGAATCAGCANNNCTGGCAGTCAAGAAGATCAAGGCATTGGGTAATGCAAGGA
TCGAGATTGATCCACGGAATGAGTTCTATGTTGTAGCAGTAGCAACTGCGATATCTCTTTGGCTGATGTCAAGACAATAT
CGAAGCCTTGGCGACCCCACATTTCCTGGTGGCAGCATGAAAAAGCTTCAGGCTTGGAAGCGTGTTTCTAAACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28240.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis