Browse Element(s) Details


OsAffx.31422.1.S1_at

Description tigr:9633.m00126
TID=OsAffx.31422.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0210010/11hypothetical protein
LOC_Os11g4120010/11hypothetical protein
LOC_Os11g3829010/11hypothetical protein
LOC_Os01g141701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02060Os.10155.1.S1_at11/115+578361..581363amino acid selective channel protein, putative, expressed
LOC_Os05g02070Os.12791.4.S1_x_at11/115+583909..584822Metallothionein family protein, expressed
LOC_Os05g02070Os.12791.2.S1_a_at11/115+583909..584822Metallothionein family protein, expressed
LOC_Os05g02070Os.14153.3.S1_x_at9/115+583909..584822Metallothionein family protein, expressed
LOC_Os05g02070Os.12791.1.S1_a_at8/115+583909..584822Metallothionein family protein, expressed
LOC_Os05g02070Os.12791.2.S1_x_at5/115+583909..584822Metallothionein family protein, expressed
LOC_Os05g02080OsAffx.31479.5.S1_x_at11/115+591006..597274hypothetical protein
LOC_Os05g02080OsAffx.9194.2.S1_at3/115+591006..597274hypothetical protein
LOC_Os05g02090OsAffx.31479.1.S1_x_at11/115+598844..604260AT hook motif-containing protein, putative
LOC_Os05g02090OsAffx.31479.4.S1_x_at9/115+598844..604260AT hook motif-containing protein, putative
LOC_Os05g02100OsAffx.31422.1.S1_at10/115+604775..605726hypothetical protein
LOC_Os05g02110OsAffx.14499.1.S1_at11/115+607698..610496Protein phosphatase 2C containing protein, expressed
LOC_Os05g02120Os.7725.1.S1_at11/115+611761..616823pectinacetylesterase family protein, putative, expressed
LOC_Os05g02130OsAffx.23573.1.S1_s_at11/115+617592..621358ankyrin repeat family protein, putative, expressed
LOC_Os05g02130Os.21180.2.S1_x_at6/115+617592..621358ankyrin repeat family protein, putative, expressed
LOC_Os05g02130Os.21180.1.S1_at3/115+617592..621358ankyrin repeat family protein, putative, expressed
LOC_Os05g02140OsAffx.8823.1.S1_x_at1/115+626902..628647ANTH domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31422.1.S1_at--439--1935Chr11:26620776..26620800 (25 bp)
ACGGAGGTCTCGATCTGACGTGCGC
NONE
OsAffx.31422.1.S1_at--1051--3855Chr11:26620790..26620814 (25 bp)
CTGACGTGCGCTCCCGCAAGGTTGT
NONE
OsAffx.31422.1.S1_at--389--1016Chr11:26620808..26620832 (25 bp)
AGGTTGTGGAGTGCGAGGCCGAGCT
NONE
OsAffx.31422.1.S1_at--1046--2615Chr11:26620861..26620885 (25 bp)
AACCGCTTCACTCGCGATTGGGCTG
NONE
OsAffx.31422.1.S1_at--712--10515Chr11:26620867..26620891 (25 bp)
TTCACTCGCGATTGGGCTGTACAAC
NONE
OsAffx.31422.1.S1_at--763--8391NONE
GGCGCTGTCCTCAGTGGATTTGGCA
NONE
OsAffx.31422.1.S1_at--30--7275Chr11:26621351..26621494 (25 bp)
GTCCTCAGTGGATTTGGCATCAGCT
NONE
OsAffx.31422.1.S1_at--527--3755Chr11:26621476..26621497 (22 bp)
CTCAGTGGATTTGGCATCAGCTGCT
NONE
OsAffx.31422.1.S1_at--1136--3173Chr11:22170759..22170783 (25 bp)
AATTGGCAGCGATGGAGTTGTTGTT
LOC_Os11g38290
OsAffx.31422.1.S1_at--1132--1234Chr11:26621532..26621556 (25 bp)
AGTTGTTGTTCACAGCTCTATGGAA
NONE
OsAffx.31422.1.S1_at--779--10794Chr11:26621537..26621561 (25 bp)
TTGTTCACAGCTCTATGGAAAGACG
NONE
Target Sequence 
ACGGAGGTCTCGATCTGACGTGCGCTCCCGCAAGGTTGTGGAGTGCGAGGCCGAGCTGGTTGCGCCGCCGAGCTACTGCA
TCGCCAACCGCTTCACTCGCGATTGGGCTGTACAACNGGCGCTGTCCTCAGTGGATTTGGCATCAGCTGCTGGGGTGTTC
GCNAGGGGACAATTGGCAGCGATGGAGTTGTTGTTCACAGCTCTATGGAAAGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31422.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis