Browse Element(s) Details


Os.7725.1.S1_at

Description gb:AK068437.1
DB_XREF= gi:32978455
TID=Os.7725.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7725 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013156H21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013156H21, full insert sequence.
FL= gb:AK068437.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0212011/11pectinacetylesterase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02080OsAffx.31479.5.S1_x_at11/115+591006..597274hypothetical protein
LOC_Os05g02080OsAffx.9194.2.S1_at3/115+591006..597274hypothetical protein
LOC_Os05g02090OsAffx.31479.1.S1_x_at11/115+598844..604260AT hook motif-containing protein, putative
LOC_Os05g02090OsAffx.31479.4.S1_x_at9/115+598844..604260AT hook motif-containing protein, putative
LOC_Os05g02100OsAffx.31422.1.S1_at10/115+604775..605726hypothetical protein
LOC_Os05g02110OsAffx.14499.1.S1_at11/115+607698..610496Protein phosphatase 2C containing protein, expressed
LOC_Os05g02120Os.7725.1.S1_at11/115+611761..616823pectinacetylesterase family protein, putative, expressed
LOC_Os05g02130OsAffx.23573.1.S1_s_at11/115+617592..621358ankyrin repeat family protein, putative, expressed
LOC_Os05g02130Os.21180.2.S1_x_at6/115+617592..621358ankyrin repeat family protein, putative, expressed
LOC_Os05g02130Os.21180.1.S1_at3/115+617592..621358ankyrin repeat family protein, putative, expressed
LOC_Os05g02140OsAffx.8823.1.S1_x_at1/115+626902..628647ANTH domain containing protein
LOC_Os05g02150Os.55878.1.S1_at11/115+636154..638076Dof domain, zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7725.1.S1_at--664--951Chr05:616254..616278 (25 bp)
AGGACATCCCTTTGTAGGTCATCTG
LOC_Os05g02120
Os.7725.1.S1_at--1134--10031Chr05:616282..616306 (25 bp)
TAGATTGCATGTCTCCACTACGGCA
LOC_Os05g02120
Os.7725.1.S1_at--1026--1911Chr05:616301..616325 (25 bp)
ACGGCATTACCTCATGTTAGTTTAA
LOC_Os05g02120
Os.7725.1.S1_at--604--7451Chr05:616363..616387 (25 bp)
GTGTCAGTATTCCTCCAATCTTCTT
LOC_Os05g02120
Os.7725.1.S1_at--759--10491Chr05:616398..616422 (25 bp)
TTCAATATTTTGCTCGTGGTCTAAC
LOC_Os05g02120
Os.7725.1.S1_at--50--7511Chr05:616413..616437 (25 bp)
GTGGTCTAACGTTGAATCTGCTGAA
LOC_Os05g02120
Os.7725.1.S1_at--1140--8811Chr05:616497..616521 (25 bp)
TGATTGTGAATATCCCTGCAACCCG
LOC_Os05g02120
Os.7725.1.S1_at--221--5691Chr05:616521..616545 (25 bp)
GACTTGCCACAACTTGGTTTTTGCC
LOC_Os05g02120
Os.7725.1.S1_at--25--9831Chr05:616572..616596 (25 bp)
TAAACACGTTTCTCTTTTTGCCATG
LOC_Os05g02120
Os.7725.1.S1_at--911--9731Chr05:616641..616665 (25 bp)
TAATCTTCAGACTCGTCGGGTGTTT
LOC_Os05g02120
Os.7725.1.S1_at--420--7311Chr05:616768..616792 (25 bp)
GTGCTGTACTTCACAACTTGTTTTC
LOC_Os05g02120
Target Sequence 
AGGACATCCCTTTGTAGGTCATCTGTTGTAGATTGCATGTCTCCACTACGGCATTACCTCATGTTAGTTTAATTTCCTGC
ACATGATACTTACTGAGCTAACCATGAAGGTGTCAGTATTCCTCCAATCTTCTTGGTTTACTTCTTCAATATTTTGCTCG
TGGTCTAACGTTGAATCTGCTGAATAGACCATTGCAGAGGCGGTTGGAGATTGGTTCTTTGACAGAAGAGAGGTGAAGGA
AATTGATTGTGAATATCCCTGCAACCCGACTTGCCACAACTTGGTTTTTGCCAAGCCTTTCAAGGCATGATGAAGTTCTA
AACACGTTTCTCTTTTTGCCATGATATTGTAAAACAGGAAATTTTATATCAATCATCGGTCATCATGTAATCTTCAGACT
CGTCGGGTGTTTGACACCCAAAATCATACATCTGAGATAGTTAGACTGGCCGAATTTTTTTTCCACGCAATTTATGTAGG
ATTATAAGTAGTTTATTCAAAAGTAGAATTGTATGTGCTGTACTTCACAACTTGTTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7725.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis