Browse Element(s) Details


Os.55878.1.S1_at

Description gb:AK108933.1
DB_XREF= gi:32994142
TID=Os.55878.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55878 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-153-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-153-A09, full insert sequence.
FL= gb:AK108933.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0215011/11Dof domain, zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02120Os.7725.1.S1_at11/115+611761..616823pectinacetylesterase family protein, putative, expressed
LOC_Os05g02130OsAffx.23573.1.S1_s_at11/115+617592..621358ankyrin repeat family protein, putative, expressed
LOC_Os05g02130Os.21180.2.S1_x_at6/115+617592..621358ankyrin repeat family protein, putative, expressed
LOC_Os05g02130Os.21180.1.S1_at3/115+617592..621358ankyrin repeat family protein, putative, expressed
LOC_Os05g02140OsAffx.8823.1.S1_x_at1/115+626902..628647ANTH domain containing protein
LOC_Os05g02150Os.55878.1.S1_at11/115+636154..638076Dof domain, zinc finger family protein, expressed
LOC_Os05g02160NANA5+650291..650665hypothetical protein
LOC_Os05g02170OsAffx.26690.1.S1_at11/115+657944..658240hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009640biological_processphotomorphogenesis
GO:0045449biological_processregulation of transcription
GO:0045941biological_processpositive regulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55878.1.S1_at--569--8271Chr05:636699..636723 (25 bp)
GGCATGTATGGCGATCATCACCTCG
LOC_Os05g02150
Os.55878.1.S1_at--162--1131Chr05:636651..636675 (25 bp)
AGTGCAACCACAGGTAACCATCTCT
LOC_Os05g02150
Os.55878.1.S1_at--659--7831Chr05:636639..636663 (25 bp)
GGTAACCATCTCTTGTAATGATCGA
LOC_Os05g02150
Os.55878.1.S1_at--821--5911Chr05:636619..636638 (20 bp)
GAGCTAGCCTATAACTAATCGCAAT
LOC_Os05g02150
Os.55878.1.S1_at--197--5051Chr05:636554..636578 (25 bp)
GCAGACTCTCTACGATTAGCTAGCT
LOC_Os05g02150
Os.55878.1.S1_at--224--9751Chr05:636516..636540 (25 bp)
TAATAGGGCGTGTGATCGATCATAT
LOC_Os05g02150
Os.55878.1.S1_at--711--6391Chr05:636417..636441 (25 bp)
GATCGAGATCGAGGCATTTGCATTT
LOC_Os05g02150
Os.55878.1.S1_at--171--10751Chr05:636385..636409 (25 bp)
TTGCAATTAGGTGATGTGTCCCAAT
LOC_Os05g02150
Os.55878.1.S1_at--865--451Chr05:636272..636296 (25 bp)
ATCTCACTTGATGTGTTTCTTCTTC
LOC_Os05g02150
Os.55878.1.S1_at--532--8431Chr05:636195..636219 (25 bp)
GGCCACGTACGTTATGTGTACCACT
LOC_Os05g02150
Os.55878.1.S1_at--1072--7431Chr05:636180..636204 (25 bp)
GTGTACCACTACTGTTGTTCATTTT
LOC_Os05g02150
Target Sequence 
GGCATGTATGGCGATCATCACCTCGCTGGAGGATACACCTCCTACTCCAGTGCAACCACAGGTAACCATCTCTTGTAATG
ATCGAGAGCTAGCCTATAACTAATCGCAATCTAGCTAGCTAATGGCAGAGATCTGCAAATATAATGCAGACTCTCTACGA
TTAGCTAGCTAGATATATATTCATAATAGGGCGTGTGATCGATCATATCGATGGTGATGGTGATGGTGGTGTGAGATATA
GAACCAAATTAAGTTTAAGGATGGTTGATCTCGATCGATCGAGATCGAGATCGAGGCATTTGCATTTTTTGCACTTGCAA
TTAGGTGATGTGTCCCAATGAAGACTGGAGGAGTGTGTGTTTAATTTTGATCATGCAAAAGTAGTACTAGTATTTTCTAG
CTAGTTTAGCTTTGCATGCATGATCTAATCTCACTTGATGTGTTTCTTCTTCTTCTTCTTTTCTTTTAAATGTTAGGGTT
TTTTTTTTCTCTCTCGTGCATTTGGGGCCACGTACGTTATGTGTACCACTACTGTTGTTCATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55878.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis