Browse Element(s) Details


OsAffx.8823.1.S1_x_at

Description gb:NM_194210.1
DB_XREF= gi:34915457
GEN=P0022B05.44
TID=OsAffx.8823.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (P0022B05.44), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g021401/11ANTH domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02090OsAffx.31479.1.S1_x_at11/115+598844..604260AT hook motif-containing protein, putative
LOC_Os05g02090OsAffx.31479.4.S1_x_at9/115+598844..604260AT hook motif-containing protein, putative
LOC_Os05g02100OsAffx.31422.1.S1_at10/115+604775..605726hypothetical protein
LOC_Os05g02110OsAffx.14499.1.S1_at11/115+607698..610496Protein phosphatase 2C containing protein, expressed
LOC_Os05g02120Os.7725.1.S1_at11/115+611761..616823pectinacetylesterase family protein, putative, expressed
LOC_Os05g02130OsAffx.23573.1.S1_s_at11/115+617592..621358ankyrin repeat family protein, putative, expressed
LOC_Os05g02130Os.21180.2.S1_x_at6/115+617592..621358ankyrin repeat family protein, putative, expressed
LOC_Os05g02130Os.21180.1.S1_at3/115+617592..621358ankyrin repeat family protein, putative, expressed
LOC_Os05g02140OsAffx.8823.1.S1_x_at1/115+626902..628647ANTH domain containing protein
LOC_Os05g02150Os.55878.1.S1_at11/115+636154..638076Dof domain, zinc finger family protein, expressed
LOC_Os05g02160NANA5+650291..650665hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8823.1.S1_x_at--405--4451Chr07:1144865..1144889 (25 bp)
GCCTTCTCGGCGGTTGTTGGTGATG
NONE
OsAffx.8823.1.S1_x_at--732--2571Chr07:1144814..1144838 (25 bp)
AACGGCGCGCGAAGGCACGCAAGGC
NONE
OsAffx.8823.1.S1_x_at--879--2171Chr07:1144613..1144637 (25 bp)
ACACTCTACCCCATGGTGGACGCAG
NONE
OsAffx.8823.1.S1_x_at--1148--9951Chr07:1144607..1144631 (25 bp)
TACCCCATGGTGGACGCAGCTATGC
NONE
OsAffx.8823.1.S1_x_at--642--7731Chr07:1144599..1144623 (25 bp)
GGTGGACGCAGCTATGCTCCGACGT
NONE
OsAffx.8823.1.S1_x_at--924--10752Chr07:1144551..1144575 (25 bp)
TTGACCGCTTCTTCGACATGGAACA
NONE
OsAffx.8823.1.S1_x_at--353--4251Chr07:1144501..1144525 (25 bp)
CCTCGCGCGGTTGGTGGACTTTGCC
NONE
OsAffx.8823.1.S1_x_at--489--3951Chr07:1144494..1144518 (25 bp)
CGGTTGGTGGACTTTGCCGACGTCA
NONE
OsAffx.8823.1.S1_x_at--229--5771Chr07:1144476..1144500 (25 bp)
GACGTCAAGCGCATCAACGACAGAA
NONE
OsAffx.8823.1.S1_x_at--261--2591Chr07:1144461..1144485 (25 bp)
AACGACAGAATGCATCTATGGGCGG
NONE
OsAffx.8823.1.S1_x_at--620--5271Chr07:1144454..1144478 (25 bp)
GAATGCATCTATGGGCGGGCAAGCT
NONE
Target Sequence 
GCCTTCTCGGCGGTTGTTGGTGATGGGAGCGGTGGAGCCGCGTCGGGCCGCAACGGCGCGCGAAGGCACGCAAGGCCGGT
GGTGCGGCGGAGGTGCACCGGGCAACGGGGGGCCTGCAGGGGAGGCGGAGGCGCGCGGGTCCGCGCAAGGACGGCAGAGG
TGGAGGGGCCACGCATGGCCGCGGAGGCCGCGGAGCCGCACGTGGCCTCGTGCAGTCGCGCTCGTCCACCGCCTCGTCAC
CGACGGCGACCCACACTCTACCCCATGGTGGACGCAGCTATGCTCCGACGTCGCCGTCGTGCTCGCCATCCTCCTTGACC
GCTTCTTCGACATGGAACACCGCCAAGCAAACCGACGACGTCGGCCTCGCGCGGTTGGTGGACTTTGCCGACGTCAAGCG
CATCAACGACAGAATGCATCTATGGGCGGGCAAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8823.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis