Browse Element(s) Details


OsAffx.14499.1.S1_at

Description tigr:9633.m00127
TID=OsAffx.14499.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to 36519 come from this gene.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0211011/11Protein phosphatase 2C containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02070Os.12791.4.S1_x_at11/115+583909..584822Metallothionein family protein, expressed
LOC_Os05g02070Os.12791.2.S1_a_at11/115+583909..584822Metallothionein family protein, expressed
LOC_Os05g02070Os.14153.3.S1_x_at9/115+583909..584822Metallothionein family protein, expressed
LOC_Os05g02070Os.12791.1.S1_a_at8/115+583909..584822Metallothionein family protein, expressed
LOC_Os05g02070Os.12791.2.S1_x_at5/115+583909..584822Metallothionein family protein, expressed
LOC_Os05g02080OsAffx.31479.5.S1_x_at11/115+591006..597274hypothetical protein
LOC_Os05g02080OsAffx.9194.2.S1_at3/115+591006..597274hypothetical protein
LOC_Os05g02090OsAffx.31479.1.S1_x_at11/115+598844..604260AT hook motif-containing protein, putative
LOC_Os05g02090OsAffx.31479.4.S1_x_at9/115+598844..604260AT hook motif-containing protein, putative
LOC_Os05g02100OsAffx.31422.1.S1_at10/115+604775..605726hypothetical protein
LOC_Os05g02110OsAffx.14499.1.S1_at11/115+607698..610496Protein phosphatase 2C containing protein, expressed
LOC_Os05g02120Os.7725.1.S1_at11/115+611761..616823pectinacetylesterase family protein, putative, expressed
LOC_Os05g02130OsAffx.23573.1.S1_s_at11/115+617592..621358ankyrin repeat family protein, putative, expressed
LOC_Os05g02130Os.21180.2.S1_x_at6/115+617592..621358ankyrin repeat family protein, putative, expressed
LOC_Os05g02130Os.21180.1.S1_at3/115+617592..621358ankyrin repeat family protein, putative, expressed
LOC_Os05g02140OsAffx.8823.1.S1_x_at1/115+626902..628647ANTH domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14499.1.S1_at--97--9731Chr05:608902..608926 (25 bp)
TCAAGCGGCAGTTCGACGAGTGCGA
LOC_Os05g02110
OsAffx.14499.1.S1_at--1078--1491Chr05:609293..609317 (25 bp)
AGCACTTGGATGATCCTGGCTGCAT
LOC_Os05g02110
OsAffx.14499.1.S1_at--881--4171Chr05:609573..609597 (25 bp)
CCCCGTTGGAACAAGGCTCTACTAG
LOC_Os05g02110
OsAffx.14499.1.S1_at--207--6551Chr05:609612..609636 (25 bp)
GATTATGTGGGTAGCTCGCCGTACA
LOC_Os05g02110
OsAffx.14499.1.S1_at--902--8391Chr05:609674..609698 (25 bp)
GGCGCAGGACAAGTTCTTGATCCTC
LOC_Os05g02110
OsAffx.14499.1.S1_at--1021--8831Chr05:609691..609715 (25 bp)
TGATCCTCTCGTCGGATGGTCTGTA
LOC_Os05g02110
OsAffx.14499.1.S1_at--393--6251Chr05:609705..609729 (25 bp)
GATGGTCTGTATGACTACTTCACAA
LOC_Os05g02110
OsAffx.14499.1.S1_at--324--9291Chr05:609817..609838 (22 bp)
TCCGGGCCGCCAATCAAGCTGGGAT
LOC_Os05g02110
OsAffx.14499.1.S1_at--419--7671Chr05:610386..610410 (25 bp)
GGGTTCCATGAGTTGCTAGAGATTC
LOC_Os05g02110
OsAffx.14499.1.S1_at--486--8051Chr05:610416..610440 (25 bp)
GGAGATCGACGACAGTACCATGACG
LOC_Os05g02110
OsAffx.14499.1.S1_at--228--771Chr05:610441..610465 (25 bp)
ATGTCTCCATCATTATCATCTCCTT
LOC_Os05g02110
Target Sequence 
TCAAGCGGCAGTTCGACGAGTGCGAGATGGGGGAGCTGGCGGCGCTGCAGCTCACCATGGATCACAGCACCAATGTGTAC
AAGGAGGTGAGAAGGATCAGGAGTGAGCACTTGGATGATCCTGGCTGCATCACCAATGGCAGGGTGAAGGGTTGTTTGAA
GGTGACAAGAGCGTTTGGAGCTGGCTACCTAAAAGAGCCCCGTTGGAACAAGGCTCTACTAGAGGTGTTCCAGGTGGATT
ATGTGGGTAGCTCGCCGTACATCAGCTGCCGTCCGTACATCCGACACCACCGGTTAGGGGCGCAGGACAAGTTCTTGATC
CTCTCGTCGGATGGTCTGTATGACTACTTCACAAAAGAGGAGGTGGTGGCACAAGTGGAGGCCTTCACCGCCGGCTACCC
CGACGAGGACCCTGCCAAGTACCTCAGCCACCAGATTCTCCTCCGGGCCGCCAATCAAGCTGGGATGGGGTTCCATGAGT
TGCTAGAGATTCAGCAAGGAGATCGACGACAGTACCATGACGATGTCTCCATCATTATCATCTCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14499.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis