Browse Element(s) Details


Os.10155.1.S1_at

Description gb:CR291160
DB_XREF= gi:44677726
DB_XREF=CR291160
CLONE=y678g10p3
TID=Os.10155.1
CNT=40
FEA=FLmRNA
TIER=Stack
STK=23
UG=Os.10155 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033059M19, full insert sequence
FL= gb:AK101693.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0206011/11amino acid selective channel protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02010Os.11999.1.S1_at11/115+552864..554918expressed protein
LOC_Os05g02020Os.12684.1.S1_at11/115+555189..558490Protein kinase APK1A, chloroplast precursor, putative, expressed
LOC_Os05g02030OsAffx.14496.1.S1_at11/115+568308..569829OB-fold nucleic acid binding domain containing protein
LOC_Os05g02040Os.53618.1.S1_at11/115+571398..575870replication factor-a protein 1 containing protein, expressed
LOC_Os05g02050OsAffx.26687.1.S1_at11/115+577402..577786Mitochondrial import inner membrane translocase subunit Tim9, putative, expressed
LOC_Os05g02060Os.10155.1.S1_at11/115+578361..581363amino acid selective channel protein, putative, expressed
LOC_Os05g02070Os.12791.4.S1_x_at11/115+583909..584822Metallothionein family protein, expressed
LOC_Os05g02070Os.12791.2.S1_a_at11/115+583909..584822Metallothionein family protein, expressed
LOC_Os05g02070Os.14153.3.S1_x_at9/115+583909..584822Metallothionein family protein, expressed
LOC_Os05g02070Os.12791.1.S1_a_at8/115+583909..584822Metallothionein family protein, expressed
LOC_Os05g02070Os.12791.2.S1_x_at5/115+583909..584822Metallothionein family protein, expressed
LOC_Os05g02080OsAffx.31479.5.S1_x_at11/115+591006..597274hypothetical protein
LOC_Os05g02080OsAffx.9194.2.S1_at3/115+591006..597274hypothetical protein
LOC_Os05g02090OsAffx.31479.1.S1_x_at11/115+598844..604260AT hook motif-containing protein, putative
LOC_Os05g02090OsAffx.31479.4.S1_x_at9/115+598844..604260AT hook motif-containing protein, putative
LOC_Os05g02100OsAffx.31422.1.S1_at10/115+604775..605726hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0015031biological_processprotein transport
GO:0005744cellular_componentmitochondrial inner membrane presequence translocase complex
GO:0015450molecular_functionprotein translocase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10155.1.S1_at--923--6931Chr05:578429..578453 (25 bp)
GTAGTACATACGTTGGATTGGATTG
LOC_Os05g02060
Os.10155.1.S1_at--184--6471Chr05:578490..578514 (25 bp)
GATAAGCTCGCCCAGGATCGACGTC
LOC_Os05g02060
Os.10155.1.S1_at--1013--9331Chr05:578688..578712 (25 bp)
TCGCCGCCGAGGACACATTCGACTG
LOC_Os05g02060
Os.10155.1.S1_at--571--5631Chr05:578699..578723 (25 bp)
GACACATTCGACTGCCTCCACAGAG
LOC_Os05g02060
Os.10155.1.S1_at--630--7991Chr05:579414..579438 (25 bp)
GGATGTTTCAAAGCACAAGCTTGAG
LOC_Os05g02060
Os.10155.1.S1_at--118--2291Chr05:579904..579928 (25 bp)
AAATGTGCAAGGAGGGTGCCTATTG
LOC_Os05g02060
Os.10155.1.S1_at--609--91Chr05:580114..580134 (21 bp)
ATTCGTGGTCGCCATGACTGGAAGA
LOC_Os05g02060
Os.10155.1.S1_at--868--3011Chr05:580917..580941 (25 bp)
AATGCTATGATTGGAGGTGCTTTAA
LOC_Os05g02060
Os.10155.1.S1_at--1051--1031Chr05:580931..580955 (25 bp)
AGGTGCTTTAAGTGGTGCTCTGATC
LOC_Os05g02060
Os.10155.1.S1_at--655--10331Chr05:580937..580961 (25 bp)
TTTAAGTGGTGCTCTGATCTCTGCT
LOC_Os05g02060
Os.10155.1.S1_at--298--6671Chr05:581016..581040 (25 bp)
GTTGCAACAGCTGTCGAGTTCATCA
LOC_Os05g02060
Target Sequence 
GTAGTACATACGTTGGATTGGATTGGAGGAGGAGAATGCCTCGCGGTGGGTTCTCGGGGTCGATAAGCTCGCCCAGGATC
GACGTCGCCATCGACATGGGGAACCCCTTCCTCAACCGCACCGTCGACGGCTTCCTCAAGATCGGCGCCGTCGGGGCGTG
CAAGGTCGCCGCCGAGGACACATTCGACTGCCTCCACAGAGGGGATGTTTCAAAGCACAAGCTTGAGCATATGCTGAAGA
AAATGTGCAAGGAGGGTGCCTATTGGGGTACTGTTGCTGGGGTGTATGTGGGCATGGAGTACGGAGTGGAGAGGATTCGT
GGTCGCCATGACTGGAAGAATGCTATGATTGGAGGTGCTTTAAGTGGTGCTCTGATCTCTGCTGCCAGCAACAACCACNA
AAGACANAGATCATCAAGGACGCCATCACCGGAGGCGCTGTTGCAACAGCTGTCGAGTTCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10155.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis