Browse Element(s) Details


OsAffx.14496.1.S1_at

Description tigr:9633.m00119
TID=OsAffx.14496.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=replication protein A1, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0203011/11OB-fold nucleic acid binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01990Os.19569.1.S1_x_at11/115+540918..544846DEAD/DEAH box helicase, putative, expressed
LOC_Os05g01990Os.19569.1.S1_at11/115+540918..544846DEAD/DEAH box helicase, putative, expressed
LOC_Os05g01990Os.19569.2.S1_at10/115+540918..544846DEAD/DEAH box helicase, putative, expressed
LOC_Os05g02000Os.46937.1.S1_at11/115+546832..550544expressed protein
LOC_Os05g02010Os.11999.1.S1_at11/115+552864..554918expressed protein
LOC_Os05g02020Os.12684.1.S1_at11/115+555189..558490Protein kinase APK1A, chloroplast precursor, putative, expressed
LOC_Os05g02030OsAffx.14496.1.S1_at11/115+568308..569829OB-fold nucleic acid binding domain containing protein
LOC_Os05g02040Os.53618.1.S1_at11/115+571398..575870replication factor-a protein 1 containing protein, expressed
LOC_Os05g02050OsAffx.26687.1.S1_at11/115+577402..577786Mitochondrial import inner membrane translocase subunit Tim9, putative, expressed
LOC_Os05g02060Os.10155.1.S1_at11/115+578361..581363amino acid selective channel protein, putative, expressed
LOC_Os05g02070Os.12791.4.S1_x_at11/115+583909..584822Metallothionein family protein, expressed
LOC_Os05g02070Os.12791.2.S1_a_at11/115+583909..584822Metallothionein family protein, expressed
LOC_Os05g02070Os.14153.3.S1_x_at9/115+583909..584822Metallothionein family protein, expressed
LOC_Os05g02070Os.12791.1.S1_a_at8/115+583909..584822Metallothionein family protein, expressed
LOC_Os05g02070Os.12791.2.S1_x_at5/115+583909..584822Metallothionein family protein, expressed
LOC_Os05g02080OsAffx.31479.5.S1_x_at11/115+591006..597274hypothetical protein
LOC_Os05g02080OsAffx.9194.2.S1_at3/115+591006..597274hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006260biological_processDNA replication
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14496.1.S1_at--417--7551Chr05:568383..568407 (25 bp)
GTGGCGCTCTTCGACGGAACCAAGT
LOC_Os05g02030
OsAffx.14496.1.S1_at--759--51Chr05:569408..569432 (25 bp)
ATTGCTGCACTGAGCCCATACAAGT
LOC_Os05g02030
OsAffx.14496.1.S1_at--285--7711Chr05:569454..569478 (25 bp)
GGGTGACTGCAAAATCTGGTCTCCA
LOC_Os05g02030
OsAffx.14496.1.S1_at--848--2271Chr05:569465..569489 (25 bp)
AAATCTGGTCTCCAGCACTTGAGCA
LOC_Os05g02030
OsAffx.14496.1.S1_at--277--1231Chr05:569508..569532 (25 bp)
AGTTCTTCGACTTTGATCTGCTTGA
LOC_Os05g02030
OsAffx.14496.1.S1_at--1158--3431Chr05:569566..569590 (25 bp)
CAGTTCGGCTGCTGAAAAGTTCTAT
LOC_Os05g02030
OsAffx.14496.1.S1_at--988--9771Chr05:569608..569632 (25 bp)
TAAGGTCTACTTGATATCCAGAGGA
LOC_Os05g02030
OsAffx.14496.1.S1_at--837--5111Chr05:569645..569669 (25 bp)
GCACAGGAGCCTTTCAACAGTGATT
LOC_Os05g02030
OsAffx.14496.1.S1_at--829--5211Chr05:569672..569696 (25 bp)
GAATTAGCTCTGGATGCCTCAGCAT
LOC_Os05g02030
OsAffx.14496.1.S1_at--870--1531Chr05:569692..569772 (25 bp)
AGCATCAGTAGAGGGCTCGTCTCCA
LOC_Os05g02030
OsAffx.14496.1.S1_at--923--4331Chr05:569775..569799 (25 bp)
CCATGCTGCTTCAGGTGCAAATCAA
LOC_Os05g02030
Target Sequence 
GTGGCGCTCTTCGACGGAACCAAGTCGGGGCAGGGGGTGCTCGTGGCGTCCATGGCGCACCTCGTCAGGGCATGCGCCAT
CCGCGCCGGCACCATCATCCGCGTCCTCGACTATCTCTGCATCGACACAAGCCTAACACCCATTGCTGCACTGAGCCCAT
ACAAGTGTAAATGGACAATCAAGGCCAGGGTGACTGCAAAATCTGGTCTCCAGCACTTGAGCAATGACAGAGGTGAAGCA
AAGTTCTTCGACTTTGATCTGCTTGATGAGCAGGGCGGTGAAATGCTCGCAAAATGCTTCAGTTCGGCTGCTGAAAAGTT
CTATGGCCTAATTGAAGTTGATAAGGTCTACTTGATATCCAGAGGATTAGTGAAACCTGCACAGGAGCCTTTCAACAGTG
ATTATGAATTAGCTCTGGATGCCTCAGCATCAGTAGAGGGCTCGTCTCCAGTCCATGCTGCTTCAGGTGCAAATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14496.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis