Browse Element(s) Details


Os.19569.1.S1_at

Description gb:AK060179.1
DB_XREF= gi:32970197
TID=Os.19569.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19569 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013055E22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-001-A08, full insert sequence.
FL= gb:AK060179.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0199011/11DEAD/DEAH box helicase, putative, expressed
LOC_Os03g011201/11Plasma membrane ATPase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01940Os.6261.1.S1_at10/115+515991..517710Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g01940OsAffx.18117.1.S1_x_at2/115+515991..517710Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g01950Os.50420.1.S1_s_at11/115+520220..521013expressed protein
LOC_Os05g01960OsAffx.14495.1.S1_x_at11/115+526294..526805expressed protein
LOC_Os05g01970Os.15723.1.S1_a_at11/115+530063..539815expressed protein
LOC_Os05g01990Os.19569.1.S1_x_at11/115+540918..544846DEAD/DEAH box helicase, putative, expressed
LOC_Os05g01990Os.19569.1.S1_at11/115+540918..544846DEAD/DEAH box helicase, putative, expressed
LOC_Os05g01990Os.19569.2.S1_at10/115+540918..544846DEAD/DEAH box helicase, putative, expressed
LOC_Os05g02000Os.46937.1.S1_at11/115+546832..550544expressed protein
LOC_Os05g02010Os.11999.1.S1_at11/115+552864..554918expressed protein
LOC_Os05g02020Os.12684.1.S1_at11/115+555189..558490Protein kinase APK1A, chloroplast precursor, putative, expressed
LOC_Os05g02030OsAffx.14496.1.S1_at11/115+568308..569829OB-fold nucleic acid binding domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0009935biological_processnutrient import
GO:0015992biological_processproton transport
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0005515molecular_functionprotein binding
GO:0008026molecular_functionATP-dependent helicase activity
GO:0008553molecular_functionhydrogen-exporting ATPase activity, phosphorylative mechanism
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19569.1.S1_at--254--5231Chr05:543156..543180 (25 bp)
GAATATGTTCACAGGTACCTGAAGC
LOC_Os05g01990
Os.19569.1.S1_at--631--6751Chr05:543162..543186 (25 bp)
GTTCACAGGTACCTGAAGCATCTCC
LOC_Os05g01990
Os.19569.1.S1_at--268--1031Chr05:543168..543192 (25 bp)
AGGTACCTGAAGCATCTCCCTGTCT
LOC_Os05g01990
Os.19569.1.S1_at--379--8991Chr05:543175..543199 (25 bp)
TGAAGCATCTCCCTGTCTAAAACAT
LOC_Os05g01990
Os.19569.1.S1_at--664--4971Chr05:543179..543203 (25 bp)
GCATCTCCCTGTCTAAAACATTTAT
LOC_Os05g01990
Os.19569.1.S1_at--172--2512Chr05:543195..543219 (25 bp)
AACATTTATTTGTAGGTTTCTGATT
LOC_Os05g01990
Os.19569.1.S1_at--582--7871Chr05:543209..543233 (25 bp)
GGTTTCTGATTTATTGTTTCCAACA
LOC_Os05g01990
Os.19569.1.S1_at--1079--10791Chr05:543222..543246 (25 bp)
TTGTTTCCAACATAGTTATAATTGT
LOC_Os05g01990
Os.19569.1.S1_at--249--151Chr05:543247..543271 (25 bp)
ATTATTTGATTGTATACGAACAGAC
LOC_Os05g01990
Os.19569.1.S1_at--480--6871Chr05:543277..543301 (25 bp)
GTATTGTTGCAGACTAAAGCACTTT
LOC_Os05g01990
Os.19569.1.S1_at--509--9031Chr05:543284..543308 (25 bp)
TGCAGACTAAAGCACTTTACTCTTT
LOC_Os05g01990
Target Sequence 
GAATATGTTCACAGGTACCTGAAGCATCTCCCTGTCTAAAACATTTATTTGTAGGTTTCTGATTTATTGTTTCCAACATA
GTTATAATTGTATTATTTGATTGTATACGAACAGACAAAATGTATTGTTGCAGACTAAAGCACTTTACTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19569.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis