Browse Element(s) Details


Os.19569.2.S1_at

Description gb:AK066175.1
DB_XREF= gi:32976193
TID=Os.19569.2
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.19569 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013055E22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013055E22, full insert sequence.
FL= gb:AK066175.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0199010/11DEAD/DEAH box helicase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01940Os.6261.1.S1_at10/115+515991..517710Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g01940OsAffx.18117.1.S1_x_at2/115+515991..517710Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g01950Os.50420.1.S1_s_at11/115+520220..521013expressed protein
LOC_Os05g01960OsAffx.14495.1.S1_x_at11/115+526294..526805expressed protein
LOC_Os05g01970Os.15723.1.S1_a_at11/115+530063..539815expressed protein
LOC_Os05g01990Os.19569.1.S1_x_at11/115+540918..544846DEAD/DEAH box helicase, putative, expressed
LOC_Os05g01990Os.19569.1.S1_at11/115+540918..544846DEAD/DEAH box helicase, putative, expressed
LOC_Os05g01990Os.19569.2.S1_at10/115+540918..544846DEAD/DEAH box helicase, putative, expressed
LOC_Os05g02000Os.46937.1.S1_at11/115+546832..550544expressed protein
LOC_Os05g02010Os.11999.1.S1_at11/115+552864..554918expressed protein
LOC_Os05g02020Os.12684.1.S1_at11/115+555189..558490Protein kinase APK1A, chloroplast precursor, putative, expressed
LOC_Os05g02030OsAffx.14496.1.S1_at11/115+568308..569829OB-fold nucleic acid binding domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19569.2.S1_at--338--1351Chr05:543997..544021 (25 bp)
AGAGATGCCTTCTGTTCTTGGGTGC
LOC_Os05g01990
Os.19569.2.S1_at--427--5951Chr05:544114..544138 (25 bp)
GAGCAACCCTCCTTGTTGGGAAGGT
LOC_Os05g01990
Os.19569.2.S1_at--1124--9691Chr05:544138..544162 (25 bp)
TCACACCAGGTGCAACTCAAGAAGA
LOC_Os05g01990
Os.19569.2.S1_at--655--7951Chr05:544266..544290 (25 bp)
GGATCATGATCCACTCCAATTTTGT
LOC_Os05g01990
Os.19569.2.S1_at--369--10251Chr05:544286..544310 (25 bp)
TTTGTGGAACTAACAGCCGCAGCTT
LOC_Os05g01990
Os.19569.2.S1_at--162--7371Chr05:544315..544339 (25 bp)
GTGAAAACATTGACCCCATGAAGCT
LOC_Os05g01990
Os.19569.2.S1_at--143--3711Chr05:544371..544395 (25 bp)
CTAGTGTACTGCCTGTAATCTGAAA
LOC_Os05g01990
Os.19569.2.S1_at--234--5631Chr05:544406..544430 (25 bp)
GACACAGAATGTTTTGCTCAGTTTG
LOC_Os05g01990
Os.19569.2.S1_at--591--10251Chr05:544427..544451 (25 bp)
TTTGGGATTATCTACTGCTCTGCTA
LOC_Os05g01990
Os.19569.2.S1_at--124--4811Chr05:544443..544467 (25 bp)
GCTCTGCTAGTTACCCATTTTAATC
LOC_Os05g01990
Os.19569.2.S1_at--331--7431NONE
GTGTTTCTTCCTTACCGATATTGTT
NONE
Target Sequence 
AGAGATGCCTTCTGTTCTTGGGTGCGCGCCTACACTGCCCACCGAGGTGAACTGAAGAAGATTTTTATGGTCAAGAAGCT
CCATTTGGGGCATGTAGCTAGAAGCTTTGGGTTGAAGGAGCAACCCTCCTTGTTGGGAAGGTCACACCAGGTGCAACTCA
AGAAGAGGAAGAAAGAACAGAAGCGCGAAAGGCCTGCAAAAAGGAGGAAAATCCCGGCCAAGAGATGAATCTCCATAGCA
GAAATGCTTGTAACTCGAAAACTAATGGTGGATCATGATCCACTCCAATTTTGTGGAACTAACAGCCGCAGCTTGAAGGT
GAAAACATTGACCCCATGAAGCTTTCATGTTTTGGCCAGAAGCCTAGAGAAGAGCTAGTGTACTGCCTGTAATCTGAAAT
GTATCAAAAGACACAGAATGTTTTGCTCAGTTTGGGATTATCTACTGCTCTGCTAGTTACCCATTTTAATCAGAAATATA
ATCCANTGTGTTTCTTCCTTACCGATATTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19569.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis