Browse Element(s) Details


Os.6261.1.S1_at

Description gb:AK067181.1
DB_XREF= gi:32977199
TID=Os.6261.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6261 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013094N21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013094N21, full insert sequence.
FL= gb:AK067181.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0194010/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01900OsAffx.6161.1.S1_x_at11/115+492152..494080hypothetical protein
LOC_Os05g01900OsAffx.6161.1.S1_s_at11/115+492152..494080hypothetical protein
LOC_Os05g01910OsAffx.26684.1.S1_at10/115+494994..500963BPM, putative, expressed
LOC_Os05g01920NANA5+506831..507046Subtilisin-chymotrypsin inhibitor CI-1B, putative
LOC_Os05g01930OsAffx.30633.1.S1_at1/115+507554..509173hypothetical protein
LOC_Os05g01940Os.6261.1.S1_at10/115+515991..517710Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g01940OsAffx.18117.1.S1_x_at2/115+515991..517710Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g01950Os.50420.1.S1_s_at11/115+520220..521013expressed protein
LOC_Os05g01960OsAffx.14495.1.S1_x_at11/115+526294..526805expressed protein
LOC_Os05g01970Os.15723.1.S1_a_at11/115+530063..539815expressed protein
LOC_Os05g01990Os.19569.1.S1_x_at11/115+540918..544846DEAD/DEAH box helicase, putative, expressed
LOC_Os05g01990Os.19569.1.S1_at11/115+540918..544846DEAD/DEAH box helicase, putative, expressed
LOC_Os05g01990Os.19569.2.S1_at10/115+540918..544846DEAD/DEAH box helicase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6261.1.S1_at--666--4231Chr05:517131..517155 (25 bp)
CCGATCGACGGAGAGGAGTGCCATT
LOC_Os05g01940
Os.6261.1.S1_at--184--991Chr05:517144..517168 (25 bp)
AGGAGTGCCATTAGGCGCATCTTCC
LOC_Os05g01940
Os.6261.1.S1_at--306--4971Chr05:517160..517184 (25 bp)
GCATCTTCCGCAATGTGTTCTCGTG
LOC_Os05g01940
Os.6261.1.S1_at--884--9411Chr05:517180..517204 (25 bp)
TCGTGCTTTGGTCGCAGCCATTCAT
LOC_Os05g01940
Os.6261.1.S1_at--41--3651Chr05:517223..517247 (25 bp)
CTTCGCATTCGAGGCCGGAGTTGAA
LOC_Os05g01940
Os.6261.1.S1_at--1134--6651Chr05:517242..517266 (25 bp)
GTTGAACGATGCGTCTGACCGGAGC
LOC_Os05g01940
Os.6261.1.S1_at--857--1771Chr05:517259..517283 (25 bp)
ACCGGAGCGCCGTGTTCAGCCATGG
LOC_Os05g01940
Os.6261.1.S1_at--74--7771Chr05:517338..517362 (25 bp)
GGTGCAAAGATAGGCCTCAACTGAA
LOC_Os05g01940
Os.6261.1.S1_at--496--8611Chr05:517445..517469 (25 bp)
TGGTGTTGTACATAGGAGCAGCATC
LOC_Os05g01940
Os.6261.1.S1_at--100--8071Chr05:517459..517483 (25 bp)
GGAGCAGCATCACATCTACTAGTAG
LOC_Os05g01940
Os.6261.1.S1_at--116--751NONE
ATGTTTGCAGTCTTGCAGGACTCAA
NONE
Target Sequence 
CCGATCGACGGAGAGGAGTGCCATTAGGCGCATCTTCCGCAATGTGTTCTCGTGCTTTGGTCGCAGCCATTCATCGNAAT
TCTCAGGCCTNGTCTTCGCATTCGAGGCCGGAGTTGAACGATGCGTCTGACCGGAGCGCCGTGTTCAGCCATGGCTCAAG
AAGCCGGAGCACGAGCTGGAGGCTCGAAGATGGCCATGCCGACGCCATGGTGCAAAGATAGGCCTCAACTGAAGTAAGGA
AGGTCGTCGATTGTTTCCATTTCNGCGCATATGTATTTAGAGGAAAAGAAATTTGTAGTAGAACAGAATTGAGAATTGGT
GTTGTACATAGGAGCAGCATCACATCTACTAGTAGATGATAACTTGCAGGGAAGAAGATGCCCACGATGGTGATTCTGAA
ATGAGCATTTGTTGTTTAGAGTGATGAATTTGCTCTTGCTNGGTAGCAAATGTCGCTTGGAATTCTATGATTCATTCAAA
TTCATTGTGGCGATGATTCTTTGCATCTGTGAGAACGGAATGAATGAAACCATTTTGATGTTTGCAGTCTTGCAGGACTC
AA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6261.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis