Browse Element(s) Details


OsAffx.18117.1.S1_x_at

Description tigr:9638.m00300
TID=OsAffx.18117.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0392011/11zinc finger family protein, putative
LOC_Os05g019402/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g03880OsAffx.30265.1.S1_at11/1110+1750494..1751369CAF1 family ribonuclease containing protein
LOC_Os10g03890OsAffx.4997.1.S1_at11/1110+1752563..1753140hypothetical protein
LOC_Os10g03900Os.46496.2.A1_at11/1110+1755159..1757329hypothetical protein
LOC_Os10g03900Os.8362.2.S1_x_at1/1110+1755159..1757329hypothetical protein
LOC_Os10g03910Os.46426.1.S1_at11/1110+1758934..1761825F-box domain containing protein, expressed
LOC_Os10g03920OsAffx.18117.1.S1_at11/1110+1767472..1768125zinc finger family protein, putative
LOC_Os10g03920OsAffx.18117.1.S1_x_at11/1110+1767472..1768125zinc finger family protein, putative
LOC_Os10g03930Os.5824.1.S1_at11/1110+1769229..1771680F-box domain containing protein, expressed
LOC_Os10g03940OsAffx.30266.1.S1_at11/1110+1773890..1774983hypothetical protein
LOC_Os10g03950OsAffx.8539.1.S1_at11/1110+1776363..1777238Legume lectins beta domain containing protein
LOC_Os10g03960OsAffx.30267.1.S1_at9/1110+1784206..1786243hypothetical protein
LOC_Os10g03970Os.46500.2.S1_at11/1110+1790877..1793610transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03970Os.46500.1.S1_at4/1110+1790877..1793610transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18117.1.S1_x_at--1143--4271Chr10:1767539..1767563 (25 bp)
CCTCCTACTGGTGCTACAATTGCGA
LOC_Os10g03920
OsAffx.18117.1.S1_x_at--189--3731Chr10:1767552..1767576 (25 bp)
CTACAATTGCGACCCCTTCGTGCGT
LOC_Os10g03920
OsAffx.18117.1.S1_x_at--970--551Chr10:1767628..1767652 (25 bp)
ATCCTCGAGGAGATGGGTGCACCCC
LOC_Os10g03920
OsAffx.18117.1.S1_x_at--1157--2311Chr10:1767697..1767721 (25 bp)
AAAGACCTGCGCCTGCGACGGACAT
LOC_Os10g03920
OsAffx.18117.1.S1_x_at--997--4091Chr10:1767712..1767736 (25 bp)
CGACGGACATGCTGCGCTGACGCAG
LOC_Os10g03920
OsAffx.18117.1.S1_x_at--225--6751Chr10:1767762..1767786 (25 bp)
GTTCAACCCCGTCATCGTGCTTTGC
LOC_Os10g03920
OsAffx.18117.1.S1_x_at--863--9311Chr10:1767827..1767851 (25 bp)
TCGCCACGGTTACTAGCTTCGAGCT
LOC_Os10g03920
OsAffx.18117.1.S1_x_at--756--10012Chr10:1767840..1767864 (25 bp)
TAGCTTCGAGCTCTTCTACGACGAC
LOC_Os10g03920
OsAffx.18117.1.S1_x_at--59--6013Chr10:1767895..1767919 (25 bp)
GAGACCATGTCGGACTTCCTCATGG
LOC_Os10g03920
OsAffx.18117.1.S1_x_at--677--1571Chr10:1767947..1767971 (25 bp)
AGCTCACCCAGATCGAAGCCGGCGG
LOC_Os10g03920
OsAffx.18117.1.S1_x_at--349--4151Chr10:1768041..1768065 (25 bp)
CGCCCAGTTCAATCGCCGGAGAGGA
LOC_Os10g03920
Target Sequence 
CCTCCTACTGGTGCTACAATTGCGACCCCTTCGTGCGTGCCGCCCCTCACAAAGACTCCGCTGTCGCCTACCCGAACTAC
GGCGGCGGCATCCTCGAGGAGATGGGTGCACCCCCACCGTGCACCGCCTACCTCCGCCACCCGTGCGCGCACCACGCCAA
AGACCTGCGCCTGCGACGGACATGCTGCGCTGACGCAGTGGCGGCAGCCGATGACCGCTCGCCGTTCAACCCCGTCATCG
TGCTTTGCCGCTCCCCCGCTGCCGTAGCTGCCGGCGACGATGACTCCCTCGCCACGGTTACTAGCTTCGAGCTCTTCTAC
GACGACGGCGTGGGCTCCGGCCTCCGCCCGCTCCCGGAGACCATGTCGGACTTCCTCATGGGCTCCGCCTTCGAGCGTCT
CCTCGACCAGCTCACCCAGATCGAAGCCGGCGGCCTCTCCCGCGCAAGGGAGAACCCGCCGGCCTCCAAGGCCTCCATCT
CCATGCCGCGGGGCCGCCCACTCGCCCAGTTCAATCGCCGGAGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18117.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis