Browse Element(s) Details


OsAffx.8539.1.S1_at

Description tigr:9638.m00303
TID=OsAffx.8539.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Legume lectins beta domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0395011/11Legume lectins beta domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g03880OsAffx.30265.1.S1_at11/1110+1750494..1751369CAF1 family ribonuclease containing protein
LOC_Os10g03890OsAffx.4997.1.S1_at11/1110+1752563..1753140hypothetical protein
LOC_Os10g03900Os.46496.2.A1_at11/1110+1755159..1757329hypothetical protein
LOC_Os10g03900Os.8362.2.S1_x_at1/1110+1755159..1757329hypothetical protein
LOC_Os10g03910Os.46426.1.S1_at11/1110+1758934..1761825F-box domain containing protein, expressed
LOC_Os10g03920OsAffx.18117.1.S1_at11/1110+1767472..1768125zinc finger family protein, putative
LOC_Os10g03920OsAffx.18117.1.S1_x_at11/1110+1767472..1768125zinc finger family protein, putative
LOC_Os10g03930Os.5824.1.S1_at11/1110+1769229..1771680F-box domain containing protein, expressed
LOC_Os10g03940OsAffx.30266.1.S1_at11/1110+1773890..1774983hypothetical protein
LOC_Os10g03950OsAffx.8539.1.S1_at11/1110+1776363..1777238Legume lectins beta domain containing protein
LOC_Os10g03960OsAffx.30267.1.S1_at9/1110+1784206..1786243hypothetical protein
LOC_Os10g03970Os.46500.2.S1_at11/1110+1790877..1793610transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03970Os.46500.1.S1_at4/1110+1790877..1793610transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03980OsAffx.411.1.S1_at11/1110+1798619..1799149retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8539.1.S1_at--869--3171Chr10:1776833..1776857 (25 bp)
CAATCATTCGAAGGCCTACGGCACA
LOC_Os10g03950
OsAffx.8539.1.S1_at--243--331Chr10:1776887..1776911 (25 bp)
ATACAACAACATCTGGGACCCCAAT
LOC_Os10g03950
OsAffx.8539.1.S1_at--542--351Chr10:1776910..1776934 (25 bp)
ATAAGACCTACGACCACATGGGCGT
LOC_Os10g03950
OsAffx.8539.1.S1_at--647--2831Chr10:1776968..1776992 (25 bp)
AAGTTTGCCGAGCTACAGCCTGAAT
LOC_Os10g03950
OsAffx.8539.1.S1_at--693--8951Chr10:1777000..1777024 (25 bp)
TGACAGCCTCCATCAGTTTTAACAG
LOC_Os10g03950
OsAffx.8539.1.S1_at--69--4931Chr10:1777040..1777064 (25 bp)
GCTTGCCAACCTGCATTTTGATGAT
LOC_Os10g03950
OsAffx.8539.1.S1_at--717--6291Chr10:1777059..1777083 (25 bp)
GATGATCATCCATCGTTTCAACCGG
LOC_Os10g03950
OsAffx.8539.1.S1_at--333--1031Chr10:1777087..1777111 (25 bp)
AGGTCAGTGCGATTTTGCCGGATCC
LOC_Os10g03950
OsAffx.8539.1.S1_at--437--7831Chr10:1777112..1777136 (25 bp)
GGTCACATTGCTTCCACAAGAGGTA
LOC_Os10g03950
OsAffx.8539.1.S1_at--1012--6131Chr10:1777131..1777155 (25 bp)
GAGGTATCCGTTGGGTTTTCCGCAG
LOC_Os10g03950
OsAffx.8539.1.S1_at--1119--7371Chr10:1777174..1777198 (25 bp)
GTGAGCTCCATCAGATACTTTCATG
LOC_Os10g03950
Target Sequence 
CAATCATTCGAAGGCCTACGGCACAGACCGGTTCATCGCCGTCGAGTTCGACACATACAACAACATCTGGGACCCCAATA
AGACCTACGACCACATGGGCGTCGACATCAGCGCCATCGAGTCGGCTAACACGACAAGTTTGCCGAGCTACAGCCTGAAT
GGCACGATGACAGCCTCCATCAGTTTTAACAGCAGCACCCGGATGCTGCTTGCCAACCTGCATTTTGATGATCATCCATC
GTTTCAACCGGCCGAGGTCAGTGCGATTTTGCCGGATCCGGTCACATTGCTTCCACAAGAGGTATCCGTTGGGTTTTCCG
CAGCCACCGGCGGCTCTGGCAGTGAGCTCCATCAGATACTTTCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8539.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis