Browse Element(s) Details


Os.5824.1.S1_at

Description gb:AU094243
DB_XREF= gi:8856925
DB_XREF=AU094243
CLONE=E3715
TID=Os.5824.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.5824 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBb0072F04.4), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0393011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g03880OsAffx.30265.1.S1_at11/1110+1750494..1751369CAF1 family ribonuclease containing protein
LOC_Os10g03890OsAffx.4997.1.S1_at11/1110+1752563..1753140hypothetical protein
LOC_Os10g03900Os.46496.2.A1_at11/1110+1755159..1757329hypothetical protein
LOC_Os10g03900Os.8362.2.S1_x_at1/1110+1755159..1757329hypothetical protein
LOC_Os10g03910Os.46426.1.S1_at11/1110+1758934..1761825F-box domain containing protein, expressed
LOC_Os10g03920OsAffx.18117.1.S1_at11/1110+1767472..1768125zinc finger family protein, putative
LOC_Os10g03920OsAffx.18117.1.S1_x_at11/1110+1767472..1768125zinc finger family protein, putative
LOC_Os10g03930Os.5824.1.S1_at11/1110+1769229..1771680F-box domain containing protein, expressed
LOC_Os10g03940OsAffx.30266.1.S1_at11/1110+1773890..1774983hypothetical protein
LOC_Os10g03950OsAffx.8539.1.S1_at11/1110+1776363..1777238Legume lectins beta domain containing protein
LOC_Os10g03960OsAffx.30267.1.S1_at9/1110+1784206..1786243hypothetical protein
LOC_Os10g03970Os.46500.2.S1_at11/1110+1790877..1793610transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03970Os.46500.1.S1_at4/1110+1790877..1793610transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5824.1.S1_at--274--7791Chr10:1769744..1769768 (25 bp)
GGTCGAAGACGTGGTGAACTTCTTT
LOC_Os10g03930
Os.5824.1.S1_at--915--3471Chr10:1769423..1769447 (25 bp)
CAGGTTCATATCATAACATTTGTTG
LOC_Os10g03930
Os.5824.1.S1_at--147--2091Chr10:1769408..1769432 (25 bp)
ACATTTGTTGCTCCAGTTGAGTCCG
LOC_Os10g03930
Os.5824.1.S1_at--1072--6651Chr10:1769402..1769426 (25 bp)
GTTGCTCCAGTTGAGTCCGAAAGCA
LOC_Os10g03930
Os.5824.1.S1_at--186--251Chr10:1769376..1769400 (25 bp)
ATATAAACATGTATACTGCTCTTGT
LOC_Os10g03930
Os.5824.1.S1_at--755--10771Chr10:1769351..1769375 (25 bp)
TTGGTGCTATGATATGAGTAGAAAC
LOC_Os10g03930
Os.5824.1.S1_at--378--5531Chr10:1769331..1769355 (25 bp)
GAAACAATCATGTCTTAGTAGTACT
LOC_Os10g03930
Os.5824.1.S1_at--761--4311Chr10:1769285..1769309 (25 bp)
CCTTGTTCTGTTGATGTTCTATTGT
LOC_Os10g03930
Os.5824.1.S1_at--977--9471Chr10:1769279..1769303 (25 bp)
TCTGTTGATGTTCTATTGTCCTATA
LOC_Os10g03930
Os.5824.1.S1_at--53--6271Chr10:1769273..1769297 (25 bp)
GATGTTCTATTGTCCTATAACCAAG
LOC_Os10g03930
Os.5824.1.S1_at--898--10171Chr10:1769258..1769282 (25 bp)
TATAACCAAGACGTACTGCAAGTTG
LOC_Os10g03930
Target Sequence 
GGTCGAAGACGTGGTGAACTTCTTTGTAAATAGTGGACTGACCTCTGCTCAGGTTCATATCATACGCCGGGTGTAGATCA
AGTACATGTGAGCACCTTACGTGTGTTGAAGTCTTATGCTCGGAGGATGATCCCCTGGTCAAAGACGTGGTGAACTTCTT
TGTAAATAGTGGACTGACCTCTGCTCAGGTTCATATCATACGCCGGGTGTAGATCAAGTACATGTGAGCACCTTACGTGT
GTTGAAGTCTTATGCTCGGAGGATGATCCCCTGGTCAAAGACGTGGTGAACTTCTTTGTTAATAGTGGACTGACCTCTGC
TCAGGTTCATATCATAACATTTGTTGCTCCAGTTGAGTCCGAAAGCACATATAAACATGTATACTGCTCTTGTTTGGTGC
TATGATATGAGTAGAAACAATCATGTCTTAGTAGTACTATGTAAGTGAAAGGTCTGTCNCCTTGTTCTGTTGATGTTCTA
TTGTCCTATAACCAAGACGTACTGCAAGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5824.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis