Browse Element(s) Details


Os.46496.2.A1_at

Description gb:NM_194704.1
DB_XREF= gi:37530767
TID=Os.46496.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46496 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0020E23.21), mRNA.
PROD=unknown protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0390011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g03850OsAffx.30264.1.S1_at11/1110+1727724..1736306F-box domain containing protein, expressed
LOC_Os10g03850Os.27520.4.S1_a_at11/1110+1727724..1736306F-box domain containing protein, expressed
LOC_Os10g03850Os.10255.1.S1_s_at7/1110+1727724..1736306F-box domain containing protein, expressed
LOC_Os10g03850Os.38269.1.S1_x_at2/1110+1727724..1736306F-box domain containing protein, expressed
LOC_Os10g03850Os.8362.2.S1_x_at1/1110+1727724..1736306F-box domain containing protein, expressed
LOC_Os10g03850Os.51910.1.S1_x_at1/1110+1727724..1736306F-box domain containing protein, expressed
LOC_Os10g03860Os.46707.1.A1_at2/1110+1736069..1736981expressed protein
LOC_Os10g03860Os.55601.1.S1_at1/1110+1736069..1736981expressed protein
LOC_Os10g03870Os.46806.1.S1_at10/1110+1739610..1742217F-box domain containing protein, expressed
LOC_Os10g03880OsAffx.30265.1.S1_at11/1110+1750494..1751369CAF1 family ribonuclease containing protein
LOC_Os10g03890OsAffx.4997.1.S1_at11/1110+1752563..1753140hypothetical protein
LOC_Os10g03900Os.46496.2.A1_at11/1110+1755159..1757329hypothetical protein
LOC_Os10g03900Os.8362.2.S1_x_at1/1110+1755159..1757329hypothetical protein
LOC_Os10g03910Os.46426.1.S1_at11/1110+1758934..1761825F-box domain containing protein, expressed
LOC_Os10g03920OsAffx.18117.1.S1_at11/1110+1767472..1768125zinc finger family protein, putative
LOC_Os10g03920OsAffx.18117.1.S1_x_at11/1110+1767472..1768125zinc finger family protein, putative
LOC_Os10g03930Os.5824.1.S1_at11/1110+1769229..1771680F-box domain containing protein, expressed
LOC_Os10g03940OsAffx.30266.1.S1_at11/1110+1773890..1774983hypothetical protein
LOC_Os10g03950OsAffx.8539.1.S1_at11/1110+1776363..1777238Legume lectins beta domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46496.2.A1_at--1008--8411Chr10:1757084..1757237 (25 bp)
GGCCGTGCGGACTTTCCTTGACAAA
LOC_Os10g03900
Os.46496.2.A1_at--171--2311Chr10:1757062..1757086 (25 bp)
AAAGTGCTGAAGCTACGCGACCCCG
LOC_Os10g03900
Os.46496.2.A1_at--130--4911Chr10:1757016..1757040 (25 bp)
GCTTCAAGTTCTACAGATTGACCAG
LOC_Os10g03900
Os.46496.2.A1_at--78--6591Chr10:1756555..1757025 (25 bp)
GATTGACCAGAATCGAAGCCTCTAG
LOC_Os10g03900
Os.46496.2.A1_at--982--5251Chr10:1756546..1757016 (25 bp)
GAATCGAAGCCTCTAGTGATTTCTG
LOC_Os10g03900
Os.46496.2.A1_at--512--10591Chr10:1756503..1756527 (25 bp)
TTCTGCTGCTAAAAATTTGACCTGC
LOC_Os10g03900
Os.46496.2.A1_at--106--2451Chr10:1756492..1756516 (25 bp)
AAAATTTGACCTGCCATTTCTATTA
LOC_Os10g03900
Os.46496.2.A1_at--666--2571Chr10:1755575..1755599 (25 bp)
AACGGTATCCAAAATTCATCAATCT
LOC_Os10g03900
Os.46496.2.A1_at--20--8751Chr10:1755496..1755520 (25 bp)
TGTTTTTCTTCGGAACTCACCAATA
LOC_Os10g03900
Os.46496.2.A1_at--112--7831Chr10:1755225..1755249 (25 bp)
GGTCAATGGCGTTGTCAACTTTTTT
LOC_Os10g03900
Os.46496.2.A1_at--700--2971Chr10:1755195..1755219 (25 bp)
AATGGGATTGAACTCTGCTCAGGTT
LOC_Os10g03900
Target Sequence 
GGCCGTGCGGACTTTCCTTGACAAAGTGCTGAAGCTACGCGACCCCGCCGCGTCGATACGCACCTTCTGCTTCAAGTTCT
ACAGATTGACCAGAATCGAAGCCTCTAGTGATTTCTGCCAAAATCTCAGGAGCCTTTCTGCTGCTAAAAATTTGACCTGC
CATTTCTATTATGATGGGAAAAAGCTGACAATTGAAAACAATTTGCAACGGTATCCAAAATTCATCAATCTTGTCAGCTT
GACTCTTGGTCAATGGTGTCTGGATGCAAATTTCTATGGATTAATTGTTTTTCTTCGGAACTCACCAATACTGGAGAAGC
TAAATCTGGAACTTGAAAAGCATCGTTGGGGAAAAACATCACAAAGAATGATTGGCGAGCTTGAAGAAAGATCATTTACA
TGTGAGCACCTTACAAGTGTTAAAGTCAAATGCTTGGCGGATGATCCCCTGGTCAATGGCGTTGTCAACTTTTTTGTTAA
AATGGGATTGAACTCTGCTCAGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46496.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis