Browse Element(s) Details


Os.27520.4.S1_a_at

Description gb:AK104771.1
DB_XREF= gi:32989980
TID=Os.27520.4
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27520 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0020E23.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-039-A08, full insert sequence.
FL= gb:AK104771.1 gb:AK060163.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0385011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g03809NANA10+1706335..1706961NA
LOC_Os10g03820OsAffx.18116.1.S1_at11/1110+1710568..1711389hypothetical protein
LOC_Os10g03830Os.27532.1.S1_a_at11/1110+1713491..1724273expressed protein
LOC_Os10g03840OsAffx.30263.1.S1_at11/1110+1725136..1726654hypothetical protein
LOC_Os10g03850OsAffx.30264.1.S1_at11/1110+1727724..1736306F-box domain containing protein, expressed
LOC_Os10g03850Os.27520.4.S1_a_at11/1110+1727724..1736306F-box domain containing protein, expressed
LOC_Os10g03850Os.10255.1.S1_s_at7/1110+1727724..1736306F-box domain containing protein, expressed
LOC_Os10g03850Os.38269.1.S1_x_at2/1110+1727724..1736306F-box domain containing protein, expressed
LOC_Os10g03850Os.8362.2.S1_x_at1/1110+1727724..1736306F-box domain containing protein, expressed
LOC_Os10g03850Os.51910.1.S1_x_at1/1110+1727724..1736306F-box domain containing protein, expressed
LOC_Os10g03860Os.46707.1.A1_at2/1110+1736069..1736981expressed protein
LOC_Os10g03860Os.55601.1.S1_at1/1110+1736069..1736981expressed protein
LOC_Os10g03870Os.46806.1.S1_at10/1110+1739610..1742217F-box domain containing protein, expressed
LOC_Os10g03880OsAffx.30265.1.S1_at11/1110+1750494..1751369CAF1 family ribonuclease containing protein
LOC_Os10g03890OsAffx.4997.1.S1_at11/1110+1752563..1753140hypothetical protein
LOC_Os10g03900Os.46496.2.A1_at11/1110+1755159..1757329hypothetical protein
LOC_Os10g03900Os.8362.2.S1_x_at1/1110+1755159..1757329hypothetical protein
LOC_Os10g03910Os.46426.1.S1_at11/1110+1758934..1761825F-box domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27520.4.S1_a_at--1126--371Chr10:1728050..1728074 (25 bp)
ATCACGAATTAGTTTGCCATCCCAT
LOC_Os10g03850
Os.27520.4.S1_a_at--1000--6831Chr10:1728039..1728063 (25 bp)
GTTTGCCATCCCATTGAAGAAAATC
LOC_Os10g03850
Os.27520.4.S1_a_at--419--7191Chr10:1728000..1728024 (25 bp)
GTCGGCTACATCTGCTGGTTACAGT
LOC_Os10g03850
Os.27520.4.S1_a_at--806--7311Chr10:1727952..1727976 (25 bp)
GTGCTTTCTGCTATGACGTGAAGGT
LOC_Os10g03850
Os.27520.4.S1_a_at--459--1192Chr11:13664517..13664604 (25 bp)
AGTAGAAACAATTGCATCTTGCCTT
NONE
Os.27520.4.S1_a_at--909--4951Chr10:1727913..1727937 (25 bp)
GCATCTTGCCTTGCATGTAAGGTCA
LOC_Os10g03850
Os.27520.4.S1_a_at--924--7011Chr10:1727880..1727904 (25 bp)
GTACTTGTTTGCTGCGATCACATGA
LOC_Os10g03850
Os.27520.4.S1_a_at--892--3091Chr10:1727824..1727848 (25 bp)
AATACTGTATGGCTATGGCGTCTCC
LOC_Os10g03850
Os.27520.4.S1_a_at--137--10111Chr10:1727811..1727835 (25 bp)
TATGGCGTCTCCTGATACAGCCTGC
LOC_Os10g03850
Os.27520.4.S1_a_at--489--9711Chr10:1727776..1727800 (25 bp)
TCAACTTGGCTGGTCTCCGGTGAAA
LOC_Os10g03850
Os.27520.4.S1_a_at--141--7171Chr10:1727764..1727788 (25 bp)
GTCTCCGGTGAAACGTATTGTATTT
LOC_Os10g03850
Target Sequence 
ATCACGAATTAGTTTGCCATCCCATTGAAGAAAATCACTCTCTTTCGCCTGTCGGCTACATCTGCTGGTTACAGTAGAGT
GTTCAGTGATCTTGTTTGGTGCTTTCTGCTATGACGTGAAGGTGAGTAGAAACAATTGCATCTTGCCTTGCATGTAAGGT
CAGTGGTATTGTACTTGTTTGCTGCGATCACATGATGATTTGTAGCAATAATGATGCTCCAAGAAAAATACTGTATGGCT
ATGGCGTCTCCTGATACAGCCTGCCACTGCTTTCTCAACTTGGCTGGTCTCCGGTGAAACGTATTGTATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27520.4.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis