Browse Element(s) Details


Os.46806.1.S1_at

Description gb:AK110742.1
DB_XREF= gi:32995951
TID=Os.46806.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46806 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative gag-pol polyprotein (OSJNBb0015I11.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-170-F09, full insert sequence.
FL= gb:AK110742.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0387010/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g03830Os.27532.1.S1_a_at11/1110+1713491..1724273expressed protein
LOC_Os10g03840OsAffx.30263.1.S1_at11/1110+1725136..1726654hypothetical protein
LOC_Os10g03850OsAffx.30264.1.S1_at11/1110+1727724..1736306F-box domain containing protein, expressed
LOC_Os10g03850Os.27520.4.S1_a_at11/1110+1727724..1736306F-box domain containing protein, expressed
LOC_Os10g03850Os.10255.1.S1_s_at7/1110+1727724..1736306F-box domain containing protein, expressed
LOC_Os10g03850Os.38269.1.S1_x_at2/1110+1727724..1736306F-box domain containing protein, expressed
LOC_Os10g03850Os.8362.2.S1_x_at1/1110+1727724..1736306F-box domain containing protein, expressed
LOC_Os10g03850Os.51910.1.S1_x_at1/1110+1727724..1736306F-box domain containing protein, expressed
LOC_Os10g03860Os.46707.1.A1_at2/1110+1736069..1736981expressed protein
LOC_Os10g03860Os.55601.1.S1_at1/1110+1736069..1736981expressed protein
LOC_Os10g03870Os.46806.1.S1_at10/1110+1739610..1742217F-box domain containing protein, expressed
LOC_Os10g03880OsAffx.30265.1.S1_at11/1110+1750494..1751369CAF1 family ribonuclease containing protein
LOC_Os10g03890OsAffx.4997.1.S1_at11/1110+1752563..1753140hypothetical protein
LOC_Os10g03900Os.46496.2.A1_at11/1110+1755159..1757329hypothetical protein
LOC_Os10g03900Os.8362.2.S1_x_at1/1110+1755159..1757329hypothetical protein
LOC_Os10g03910Os.46426.1.S1_at11/1110+1758934..1761825F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46806.1.S1_at--1010--10631Chr10:1740264..1740288 (25 bp)
TTCGCAATGGTGTCCGGAATTTGTC
LOC_Os10g03870
Os.46806.1.S1_at--192--1431Chr10:1740169..1740193 (25 bp)
AGAACTCACCGAGGCTAGTGAAGCT
LOC_Os10g03870
Os.46806.1.S1_at--517--2531Chr10:1740035..1740160 (25 bp)
AACTCGCGAAGGATCGTTGGACAAC
LOC_Os10g03870
Os.46806.1.S1_at--599--9611Chr10:1739915..1739939 (25 bp)
TCATCGGTGTTGAAGATTTCTTTGT
LOC_Os10g03870
Os.46806.1.S1_at--840--4051Chr10:1739839..1739863 (25 bp)
CGAGGAGTATAAGTTACCTGCTTTT
LOC_Os10g03870
Os.46806.1.S1_at--671--6771Chr10:1739827..1739851 (25 bp)
GTTACCTGCTTTTATTCAATACTAA
LOC_Os10g03870
Os.46806.1.S1_at--466--331Chr10:1739809..1739833 (25 bp)
ATACTAACTGAGTGCCCATGCGTTG
LOC_Os10g03870
Os.46806.1.S1_at--454--8151Chr10:1739780..1739804 (25 bp)
GGAAACATTTTTCTAGTTCTATACA
LOC_Os10g03870
Os.46806.1.S1_at--427--10411Chr10:1739659..1739683 (25 bp)
TTTTGTGCTATATTCAGCTTGACAC
LOC_Os10g03870
Os.46806.1.S1_at--323--4931Chr10:1739643..1739667 (25 bp)
GCTTGACACATGTATGGTTCATTCA
LOC_Os10g03870
Os.46806.1.S1_at--892--7891NONE
GGTTCATTCATTCCATCTGCAATTA
NONE
Target Sequence 
TTCGCAATGGTGTCCGGAATTTGTCGATGTTGTCAACCTGACTCTTGGTGAATGGTGCCTGGATGCAAACTTCCATGCAC
TAATTGTATTCCTTCAGAACTCACCGAGGCTAGTGAAGCTAACTCTGAAACTCGCGAAGGATCGTTGGACAACACCACAA
AGAATCATTGGTGAGCTTGAAGAAAGATCATTTACATGTGAGCACCTTAAGATTGTTGAAGTGATATGCTTGGAGAATGA
TCCCCAGGTCATCGGTGTTGAAGATTTCTTTGTTCGTAGTGNNANNANANNNNNTNANNNNNNTNNNNNNNNNTGGAGAA
AAGACGAGGAGTATAAGTTACCTGCTTTTATTCAATACTAACTGAGTGCCCATGCGTTGCAACGGAAACATTTTTCTAGT
TCTATACAAACAAGAGATATGTCACCTTTTAATAGTTTCATGGTTCATACTGCATTTTTTTCTCATGGTGCTAAAAGTTT
AGTACCCAGAGAAAAATAACAATATTTTGTGCTATATTCAGCTTGACACATGTATGGTTCATTCATTCCATCTGCAATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46806.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis