Browse Element(s) Details


Os.27532.1.S1_a_at

Description gb:AK072882.1
DB_XREF= gi:32982905
TID=Os.27532.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27532 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0020E23.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023149K11, full insert sequence.
FL= gb:AK072882.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0383011/11expressed protein
LOC_Os05g179904/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g03770OsAffx.30564.2.S1_s_at11/1110+1688087..1688907hypothetical protein
LOC_Os10g03770OsAffx.30564.2.S1_x_at10/1110+1688087..1688907hypothetical protein
LOC_Os10g03770OsAffx.30564.1.S1_s_at6/1110+1688087..1688907hypothetical protein
LOC_Os10g03770OsAffx.30564.1.S1_at3/1110+1688087..1688907hypothetical protein
LOC_Os10g03770OsAffx.30564.3.S1_at1/1110+1688087..1688907hypothetical protein
LOC_Os10g03780Os.46561.3.S1_at11/1110+1691966..1699100F-box domain containing protein, expressed
LOC_Os10g03780Os.46561.2.S1_at11/1110+1691966..1699100F-box domain containing protein, expressed
LOC_Os10g03780Os.46561.4.S1_x_at4/1110+1691966..1699100F-box domain containing protein, expressed
LOC_Os10g03780OsAffx.30264.1.S1_at2/1110+1691966..1699100F-box domain containing protein, expressed
LOC_Os10g03780Os.8362.2.S1_x_at1/1110+1691966..1699100F-box domain containing protein, expressed
LOC_Os10g03790OsAffx.20771.1.S1_x_at11/1110+1699959..1700611hypothetical protein
LOC_Os10g03790OsAffx.20771.1.S1_at11/1110+1699959..1700611hypothetical protein
LOC_Os10g03800OsAffx.30262.1.S1_x_at11/1110+1701315..1701875hypothetical protein
LOC_Os10g03800OsAffx.30262.1.S1_at11/1110+1701315..1701875hypothetical protein
LOC_Os10g03809NANA10+1706335..1706961NA
LOC_Os10g03820OsAffx.18116.1.S1_at11/1110+1710568..1711389hypothetical protein
LOC_Os10g03830Os.27532.1.S1_a_at11/1110+1713491..1724273expressed protein
LOC_Os10g03840OsAffx.30263.1.S1_at11/1110+1725136..1726654hypothetical protein
LOC_Os10g03850OsAffx.30264.1.S1_at11/1110+1727724..1736306F-box domain containing protein, expressed
LOC_Os10g03850Os.27520.4.S1_a_at11/1110+1727724..1736306F-box domain containing protein, expressed
LOC_Os10g03850Os.10255.1.S1_s_at7/1110+1727724..1736306F-box domain containing protein, expressed
LOC_Os10g03850Os.38269.1.S1_x_at2/1110+1727724..1736306F-box domain containing protein, expressed
LOC_Os10g03850Os.8362.2.S1_x_at1/1110+1727724..1736306F-box domain containing protein, expressed
LOC_Os10g03850Os.51910.1.S1_x_at1/1110+1727724..1736306F-box domain containing protein, expressed
LOC_Os10g03860Os.46707.1.A1_at2/1110+1736069..1736981expressed protein
LOC_Os10g03860Os.55601.1.S1_at1/1110+1736069..1736981expressed protein
LOC_Os10g03870Os.46806.1.S1_at10/1110+1739610..1742217F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27532.1.S1_a_at--59--3011Chr10:1715463..1715487 (25 bp)
AATGAACACAATGGAGCAGCTCTTA
LOC_Os10g03830
Os.27532.1.S1_a_at--768--8072Chr05:10324320..10324344 (25 bp)
GGAGCAGCTCTTAGCTGTTCAAAAT
LOC_Os05g17990
Os.27532.1.S1_a_at--979--10351Chr10:1715364..1715388 (25 bp)
TTTATTGTTGGCTTTTCCCTCCCAG
LOC_Os10g03830
Os.27532.1.S1_a_at--1106--4271Chr10:1713947..1713966 (20 bp)
CCTCCCAGGCTACTGATAGAGCTAT
LOC_Os10g03830
Os.27532.1.S1_a_at--88--1371Chr10:1713930..1713954 (25 bp)
AGAGCTATACTTGCCTTGGTAGTGA
LOC_Os10g03830
Os.27532.1.S1_a_at--195--871Chr10:1713906..1713930 (25 bp)
ATGGCTCTGAGCCTTGCATTCGTGC
LOC_Os10g03830
Os.27532.1.S1_a_at--634--4932Chr10:1713891..1713915 (25 bp)
GCATTCGTGCCCACAAGGTTGCTTG
LOC_Os10g03830
Os.27532.1.S1_a_at--184--6672Chr05:10326232..10326255 (24 bp)
GTTGCTTGTCCTGATGATGTTTCTG
LOC_Os05g17990
Os.27532.1.S1_a_at--580--6272Chr10:1713859..1713883 (25 bp)
GATGTTTCTGGAGGCATTCACGAAC
LOC_Os10g03830
Os.27532.1.S1_a_at--1022--1332Chr05:10326322..10326346 (25 bp)
AGAGTGGTGGTTCAGCATTCCTGCA
LOC_Os05g17990
Os.27532.1.S1_a_at--475--9272Chr05:10326340..10326364 (25 bp)
TCCTGCAGCTCCAGTAGTCGTGGAG
LOC_Os05g17990
Target Sequence 
AATGAACACAATGGAGCAGCTCTTAGCTGTTCAAAATGCTATTTCCAAAGTTGAAGAGCTTGTTCAGGATGCAAATATTG
TTCTTCTGAAGATTAGAGCTTTATTGTTGGCTTTTCCCTCCCAGGCTACTGATAGAGCTATACTTGCCTTGGTAGTGATG
GCTCTGAGCCTTGCATTCGTGCCCACAAGGTTGCTTGTCCTGATGATGTTTCTGGAGGCATTCACGAACCACTCCCCACC
AAGGAGAGCAAGCACAGAAAGGTGGACCAGAAGGTTAAGAGAGTGGTGGTTCAGCATTCCTGCAGCTCCAGTAGTCGTGG
AG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27532.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis