Browse Element(s) Details


Os.46707.1.A1_at

Description gb:NM_195493.1
DB_XREF= gi:37532345
TID=Os.46707.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46707 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0014J14.27), mRNA.
PROD=unknown protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1417011/11hypothetical protein
LOC_Os10g038602/11expressed protein
LOC_Os12g085502/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g14100OsAffx.8347.1.S1_x_at11/1110+7425530..7426876retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14100OsAffx.8347.1.S1_at11/1110+7425530..7426876retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14120Os.26886.2.S1_s_at10/1110+7429635..7432722transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g14120Os.26886.6.S1_s_at8/1110+7429635..7432722transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g14120OsAffx.16467.1.S1_at3/1110+7429635..7432722transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g14120Os.46334.1.S1_x_at1/1110+7429635..7432722transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g14120Os.46334.1.S1_at1/1110+7429635..7432722transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g14130Os.26886.1.S1_x_at9/1110+7435556..7437385transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g14130OsAffx.16244.1.S1_x_at1/1110+7435556..7437385transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g14140Os.26886.3.S1_x_at3/1110+7438157..7438903transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g14150OsAffx.30413.1.S1_at11/1110+7440420..7442393Ras-related protein Rab-2-B, putative
LOC_Os10g14160OsAffx.30414.1.S1_at11/1110+7446236..7446523hypothetical protein
LOC_Os10g14170Os.46707.1.A1_at11/1110+7450318..7451125hypothetical protein
LOC_Os10g14180Os.6177.1.S2_a_at11/1110+7457836..7461987expressed protein
LOC_Os10g14180Os.6177.3.S1_at10/1110+7457836..7461987expressed protein
LOC_Os10g14194Os.6177.2.S1_at10/1110+7461240..7467633expressed protein
LOC_Os10g14210OsAffx.18251.1.S1_at11/1110+7470513..7471111hypothetical protein
LOC_Os10g14210OsAffx.31134.1.S1_at1/1110+7470513..7471111hypothetical protein
LOC_Os10g14220OsAffx.8345.1.S1_at11/1110+7471987..7472284retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46707.1.A1_at--940--1811Chr10:7450862..7450886 (25 bp)
ACGCCATGGCCGATCTCGGTTGCAA
LOC_Os10g14170
Os.46707.1.A1_at--549--7851Chr10:7450826..7450850 (25 bp)
GGTAGAGCTAGGTTCCTTCCAAATT
LOC_Os10g14170
Os.46707.1.A1_at--967--7731Chr10:7450730..7450754 (25 bp)
GGTGGTCTGTCCACGATGATCCCGC
LOC_Os10g14170
Os.46707.1.A1_at--976--1831Chr10:7450672..7450696 (25 bp)
ACGACGGTGCACATCCCAAATTGAA
LOC_Os10g14170
Os.46707.1.A1_at--123--7571Chr10:7450646..7450670 (25 bp)
GGGCCGGCGAGTTCTATGCTACAAG
LOC_Os10g14170
Os.46707.1.A1_at--471--10131Chr10:7450632..7450656 (25 bp)
TATGCTACAAGAGGTTTCTCAGGGC
LOC_Os10g14170
Os.46707.1.A1_at--925--10571Chr10:7450617..7450641 (25 bp)
TTCTCAGGGCGCGAGGATTTACCAT
LOC_Os10g14170
Os.46707.1.A1_at--602--6511Chr10:7450602..7450626 (25 bp)
GATTTACCATGGAACGGACGGACGA
LOC_Os10g14170
Os.46707.1.A1_at--289--1051Chr10:7450511..7450535 (25 bp)
AGGTGTTCGACGTGTGCTCCTCGGC
LOC_Os10g14170
Os.46707.1.A1_at--1111--7637Chr10:1736240..1736264 (25 bp)
GGGAGCCTCACAATGGTGATCTCTA
LOC_Os10g03860
Os.46707.1.A1_at--720--22310Chr10:1736249..1736273 (25 bp)
ACAATGGTGATCTCTAGCGGTGGTG
LOC_Os10g03860
Target Sequence 
ACGCCATGGCCGATCTCGGTTGCAAGGGGATAGGGCGGTAGAGCTAGGTTCCTTCCAAATTGATGGATGGGAAGGGGAGC
CTCTGGGGTGGTCTGTCCACGATGATCCCGCCGGCGGCGGAACGGCGGCCGGGGCGGCACAGCTACGACGGTGCACATCC
CAAATTGAAGGGGCCGGCGAGTTCTATGCTACAAGAGGTTTCTCAGGGCGCGAGGATTTACCATGGAACGGACGGACGAC
GAAGGGCGAAGACGCGTGGTGCGGTGCGGACGAAGCAGAGGTGGCTAGCGGTCGGCGACGTTCGCAGGTGTTCGACGTGT
GCTCCTCGGCTACCCGGCTTCCCCAATGGCGACGGCGGCAGCAAGACTATTCCTCCACTCCCTCCAACCTCCAGCTCCGG
CTGGGGAGCCTCACAATGGTGATCTCTAGCGGTGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46707.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis