Browse Element(s) Details


OsAffx.30414.1.S1_at

Description gb:NM_195492.1
DB_XREF= gi:37532343
TID=OsAffx.30414.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0014J14.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1416011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g14070OsAffx.20597.1.S1_at11/1110+7420622..7422124retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14080OsAffx.305.1.S1_at11/1110+7422608..7423081retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14100OsAffx.8347.1.S1_x_at11/1110+7425530..7426876retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14100OsAffx.8347.1.S1_at11/1110+7425530..7426876retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14120Os.26886.2.S1_s_at10/1110+7429635..7432722transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g14120Os.26886.6.S1_s_at8/1110+7429635..7432722transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g14120OsAffx.16467.1.S1_at3/1110+7429635..7432722transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g14120Os.46334.1.S1_x_at1/1110+7429635..7432722transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g14120Os.46334.1.S1_at1/1110+7429635..7432722transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g14130Os.26886.1.S1_x_at9/1110+7435556..7437385transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g14130OsAffx.16244.1.S1_x_at1/1110+7435556..7437385transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g14140Os.26886.3.S1_x_at3/1110+7438157..7438903transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g14150OsAffx.30413.1.S1_at11/1110+7440420..7442393Ras-related protein Rab-2-B, putative
LOC_Os10g14160OsAffx.30414.1.S1_at11/1110+7446236..7446523hypothetical protein
LOC_Os10g14170Os.46707.1.A1_at11/1110+7450318..7451125hypothetical protein
LOC_Os10g14180Os.6177.1.S2_a_at11/1110+7457836..7461987expressed protein
LOC_Os10g14180Os.6177.3.S1_at10/1110+7457836..7461987expressed protein
LOC_Os10g14194Os.6177.2.S1_at10/1110+7461240..7467633expressed protein
LOC_Os10g14210OsAffx.18251.1.S1_at11/1110+7470513..7471111hypothetical protein
LOC_Os10g14210OsAffx.31134.1.S1_at1/1110+7470513..7471111hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30414.1.S1_at--143--2591Chr10:7446266..7446290 (25 bp)
AACGGGCACCGCAGTTCAGCGAAAG
LOC_Os10g14160
OsAffx.30414.1.S1_at--1031--4211Chr10:7446274..7446298 (25 bp)
CCGCAGTTCAGCGAAAGGGACCTAC
LOC_Os10g14160
OsAffx.30414.1.S1_at--303--10531Chr10:7446280..7446304 (25 bp)
TTCAGCGAAAGGGACCTACGCAGTG
LOC_Os10g14160
OsAffx.30414.1.S1_at--510--9951Chr10:7446296..7446320 (25 bp)
TACGCAGTGGGCGACAGGCTGGACG
LOC_Os10g14160
OsAffx.30414.1.S1_at--727--8091Chr10:7446316..7446340 (25 bp)
GGACGACGGCGCTCGCTCCAATGAC
LOC_Os10g14160
OsAffx.30414.1.S1_at--544--9331Chr10:7446328..7446352 (25 bp)
TCGCTCCAATGACGGCTGCATGCGG
LOC_Os10g14160
OsAffx.30414.1.S1_at--563--891Chr10:7446414..7446438 (25 bp)
AGGCGGGCGTCGTTAGCGACTCTTT
LOC_Os10g14160
OsAffx.30414.1.S1_at--347--7191Chr10:7446422..7446446 (25 bp)
GTCGTTAGCGACTCTTTGCGGGAAA
LOC_Os10g14160
OsAffx.30414.1.S1_at--134--9991Chr10:7446427..7446451 (25 bp)
TAGCGACTCTTTGCGGGAAAGATCA
LOC_Os10g14160
OsAffx.30414.1.S1_at--118--711Chr10:7446462..7446486 (25 bp)
ATGAGGTGGGCAACACTGCGACCTT
LOC_Os10g14160
OsAffx.30414.1.S1_at--124--7611Chr10:7446469..7446493 (25 bp)
GGGCAACACTGCGACCTTTGCAGGA
LOC_Os10g14160
Target Sequence 
AACGGGCACCGCAGTTCAGCGAAAGGGACCTACGCAGTGGGCGACAGGCTGGACGACGGCGCTCGCTCCAATGACGGCTG
CATGCGGCGAAGGGGATTCAACGACGGTGGCCATTGTGGGATCAGTGGCGGCGCGGAGGAGATCGACGAGGCGGGCGTCG
TTAGCGACTCTTTGCGGGAAAGATCAGAGGAGATCAATGAGGTGGGCAACACTGCGACCTTTGCAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30414.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis