Browse Element(s) Details


OsAffx.20597.1.S1_at

Description gb:NM_195484.1
DB_XREF= gi:37532327
TID=OsAffx.20597.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative gag-pol polyprotein (OSJNBa0014J14.18), mRNA.
PROD=putative gag-pol polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1407011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g218101/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g14040OsAffx.24317.1.S1_at10/1110+7399178..7405461transposon protein, putative, unclassified
LOC_Os10g14040OsAffx.24317.1.S1_x_at9/1110+7399178..7405461transposon protein, putative, unclassified
LOC_Os10g14040OsAffx.24317.6.S1_x_at4/1110+7399178..7405461transposon protein, putative, unclassified
LOC_Os10g14040OsAffx.19019.1.S1_at1/1110+7399178..7405461transposon protein, putative, unclassified
LOC_Os10g14050Os.46845.1.S1_at11/1110+7408004..7409188expressed protein
LOC_Os10g14060NANA10+7415451..7416643retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14070OsAffx.20597.1.S1_at11/1110+7420622..7422124retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14080OsAffx.305.1.S1_at11/1110+7422608..7423081retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14100OsAffx.8347.1.S1_x_at11/1110+7425530..7426876retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14100OsAffx.8347.1.S1_at11/1110+7425530..7426876retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14120Os.26886.2.S1_s_at10/1110+7429635..7432722transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g14120Os.26886.6.S1_s_at8/1110+7429635..7432722transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g14120OsAffx.16467.1.S1_at3/1110+7429635..7432722transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g14120Os.46334.1.S1_x_at1/1110+7429635..7432722transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g14120Os.46334.1.S1_at1/1110+7429635..7432722transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g14130Os.26886.1.S1_x_at9/1110+7435556..7437385transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g14130OsAffx.16244.1.S1_x_at1/1110+7435556..7437385transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g14140Os.26886.3.S1_x_at3/1110+7438157..7438903transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g14150OsAffx.30413.1.S1_at11/1110+7440420..7442393Ras-related protein Rab-2-B, putative
LOC_Os10g14160OsAffx.30414.1.S1_at11/1110+7446236..7446523hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20597.1.S1_at--612--8931Chr10:7421446..7421470 (25 bp)
TGACGGAGAAGCTGGTCCCTCGGAA
LOC_Os10g14070
OsAffx.20597.1.S1_at--355--7291Chr10:7421488..7421512 (25 bp)
GTGCTTTTCAAGATCCGAGGACCGA
LOC_Os10g14070
OsAffx.20597.1.S1_at--422--1572Chr10:7421512..7421536 (25 bp)
AGCTCAATCATATCTTCGGACTACC
LOC_Os10g14070
OsAffx.20597.1.S1_at--985--10611Chr10:7421526..7421550 (25 bp)
TTCGGACTACCACTTGCCTGTGAGT
LOC_Os10g14070
OsAffx.20597.1.S1_at--391--2131Chr10:7421589..7421613 (25 bp)
ACAGTTCAGCCGGAAGTACCACAAT
LOC_Os10g14070
OsAffx.20597.1.S1_at--498--1411Chr10:7421680..7421704 (25 bp)
TAGGACGGTACCTCCTGGTTCTAGA
LOC_Os10g14070
OsAffx.20597.1.S1_at--59--8851Chr10:7421878..7421901 (24 bp)
TGATCACTGTTCTAGTCACCTTCAG
LOC_Os10g14070
OsAffx.20597.1.S1_at--283--4571Chr10:7421919..7421943 (25 bp)
GCGCGGAAAACATCTCCTTTGAGGT
LOC_Os10g14070
OsAffx.20597.1.S1_at--570--6151Chr10:7421939..7421963 (25 bp)
GAGGTCACCTACTTCGAAACTATTT
LOC_Os10g14070
OsAffx.20597.1.S1_at--470--8631Chr10:7421976..7422000 (25 bp)
TGGGACGACCAGCTTTAGCCAAGTT
LOC_Os10g14070
OsAffx.20597.1.S1_at--900--1871Chr10:7422049..7422073 (25 bp)
ACGAGGAGTCATATCTCTGCGCAGC
LOC_Os10g14070
Target Sequence 
TGACGGAGAAGCTGGTCCCTCGGAATAGAAAAAGTTGCCAAGGTGCTTTTCAAGATCCGAGGACCGAGCTCAATCATATC
TTCGGACTACCACTTGCCTGTGAGTCAAAGAGGAAGCAAAAGCTGACCGATAGGGAGATTAACACAGTTCAGCCGGAAGT
ACCACAATATTTGTGCTGGTCAAAGATTGCAATCAAGTTCGACCGCTCGGATCATCCTGACAGAGTGGTCCACCTAGGAC
GGTACCTCCTGGTTCTAGACCTAGTGATCACTGTTCTAGTCACCTTCAGCACTCGGGAAAACTTCCGCGCGGAAAACATC
TCCTTTGAGGTCACCTACTTCGAAACTATTTACCACACCATCCTGGGACGACCAGCTTTAGCCAAGTTCATGGTCGTTCC
ACATTACACCTACATGATAATAAAGATGTTAGGTCCACGAGGAGTCATATCTCTGCGCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20597.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis