Browse Element(s) Details


OsAffx.24317.1.S1_x_at

Description gb:NM_195481.1
DB_XREF= gi:37532321
TID=OsAffx.24317.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative transposase (OSJNBa0014J14.15), mRNA.
PROD=putative transposase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g140409/11transposon protein, putative, unclassified
LOC_Os06g065602/11Soluble starch synthase 1, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g13990NANA10+7372514..7375455retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14004OsAffx.8351.1.S1_at11/1110+7378135..7378344NA
LOC_Os10g14020Os.4882.1.S1_at11/1110+7389078..7390228expressed protein
LOC_Os10g14030Os.46053.2.S1_x_at5/1110+7391341..7394355transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g14040OsAffx.24317.1.S1_at10/1110+7399178..7405461transposon protein, putative, unclassified
LOC_Os10g14040OsAffx.24317.1.S1_x_at9/1110+7399178..7405461transposon protein, putative, unclassified
LOC_Os10g14040OsAffx.24317.6.S1_x_at4/1110+7399178..7405461transposon protein, putative, unclassified
LOC_Os10g14040OsAffx.19019.1.S1_at1/1110+7399178..7405461transposon protein, putative, unclassified
LOC_Os10g14050Os.46845.1.S1_at11/1110+7408004..7409188expressed protein
LOC_Os10g14060NANA10+7415451..7416643retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14070OsAffx.20597.1.S1_at11/1110+7420622..7422124retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14080OsAffx.305.1.S1_at11/1110+7422608..7423081retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14100OsAffx.8347.1.S1_x_at11/1110+7425530..7426876retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14100OsAffx.8347.1.S1_at11/1110+7425530..7426876retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14120Os.26886.2.S1_s_at10/1110+7429635..7432722transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g14120Os.26886.6.S1_s_at8/1110+7429635..7432722transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g14120OsAffx.16467.1.S1_at3/1110+7429635..7432722transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g14120Os.46334.1.S1_x_at1/1110+7429635..7432722transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g14120Os.46334.1.S1_at1/1110+7429635..7432722transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0010021biological_processamylopectin biosynthesis
GO:0019252biological_processstarch biosynthesis
GO:0009507cellular_componentchloroplast
GO:0009011molecular_functionstarch synthase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24317.1.S1_x_at--101--511Chr10:7403557..7403581 (25 bp)
ATCGTGGCCGCAGATTTTGGTCCTA
LOC_Os10g14040
OsAffx.24317.1.S1_x_at--751--5611NONE
GACAAAGGCCATTCCGTGTGGAGCC
NONE
OsAffx.24317.1.S1_x_at--1118--8531Chr10:7404287..7404311 (25 bp)
TGGAGCCTGCCAGTACATATCCTAA
LOC_Os10g14040
OsAffx.24317.1.S1_x_at--69--8631Chr10:7404349..7404373 (25 bp)
TGGGTGTTTCCAGAGGTGCAGTATA
LOC_Os10g14040
OsAffx.24317.1.S1_x_at--135--351Chr10:7404385..7404409 (25 bp)
ATAAAGATTGCCATCTCAACTGGAG
LOC_Os10g14040
OsAffx.24317.1.S1_x_at--1143--9611Chr10:7404577..7404601 (25 bp)
TCATGCTTGTTTTGGTGACCCAGGT
LOC_Os10g14040
OsAffx.24317.1.S1_x_at--1130--6831Chr06:3080335..3080355 (21 bp)
GTTTCCCACCGAATAACTGCATGTT
LOC_Os06g06560
OsAffx.24317.1.S1_x_at--265--6271Chr10:7404840..7404864 (25 bp)
GATGTCATCCAGATTCGAACCTTGT
LOC_Os10g14040
OsAffx.24317.1.S1_x_at--231--10852Chr10:7404861..7404885 (25 bp)
TTGTGGCCTCAATCAGCTATATGCT
LOC_Os10g14040
OsAffx.24317.1.S1_x_at--745--271Chr10:7404898..7404922 (25 bp)
ATAGTGCCTGTTGTTCATGGAACTG
LOC_Os10g14040
OsAffx.24317.1.S1_x_at--999--6211Chr10:7404923..7405284 (25 bp)
GAGGCCTCAGAGTTAAGAATCAAGA
LOC_Os10g14040
Target Sequence 
ATCGTGGCCGCAGATTTTGGTCCTATGCCAACTCACTTTTTGTCTAGTAACCAGCCATTAGAGAAGAGAGTCCTTGATCC
TGATGAGATTAGGGCAAAAGAAGCTCCATCGAAGAGACAAAGGCCATTCCGTGTGGAGCCTGCCAGTACATATCCTAACC
TAGGAATGTCACCTGAATGGTATGGATCATTAGAATGGGTGTTTCCAGAGGTGCAGTATAGTAGCATGTGTATAAAGATT
GCCATCTCAACTGGAGGTCATGCTTGTTTTGGTGACCCAGGTTTTGAAGGATGGATGAGATCCATAGAATCAGAGTACAA
GGATAAATTTCGTGGATGGGTTGGATTTACTGTTCTAGTTTCCCACCGAATAACTGCATGTTGTGATATATTGTTGATGT
CATCCAGATTCGAACCTTGTGGCCTCAATCAGCTATATGCTATGCAATATGGTATAGTGCCTGTTGTTCATGGAACTGGA
GGCCTCAGAGTTAAGAATCAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24317.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis