Browse Element(s) Details


OsAffx.8351.1.S1_at

Description gb:NM_195476.1
DB_XREF= gi:37532311
TID=OsAffx.8351.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OJ1004_F02.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1400411/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g13960OsAffx.20598.1.S1_at11/1110+7349743..7354208retrotransposon protein, putative, unclassified, expressed
LOC_Os10g13970Os.48032.1.S1_at11/1110+7357220..7360763Leucine Rich Repeat family protein, expressed
LOC_Os10g13970OsAffx.31524.1.S1_x_at1/1110+7357220..7360763Leucine Rich Repeat family protein, expressed
LOC_Os10g13970OsAffx.19417.2.S1_x_at1/1110+7357220..7360763Leucine Rich Repeat family protein, expressed
LOC_Os10g13980NANA10+7366103..7372198retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g13990NANA10+7372514..7375455retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14004OsAffx.8351.1.S1_at11/1110+7378135..7378344NA
LOC_Os10g14020Os.4882.1.S1_at11/1110+7389078..7390228expressed protein
LOC_Os10g14030Os.46053.2.S1_x_at5/1110+7391341..7394355transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g14040OsAffx.24317.1.S1_at10/1110+7399178..7405461transposon protein, putative, unclassified
LOC_Os10g14040OsAffx.24317.1.S1_x_at9/1110+7399178..7405461transposon protein, putative, unclassified
LOC_Os10g14040OsAffx.24317.6.S1_x_at4/1110+7399178..7405461transposon protein, putative, unclassified
LOC_Os10g14040OsAffx.19019.1.S1_at1/1110+7399178..7405461transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8351.1.S1_at--878--3831Chr10:7378262..7378286 (25 bp)
CTGCTGGTGATCAGAGTGAAGCGAT
LOC_Os10g14004
OsAffx.8351.1.S1_at--1109--6431Chr10:7378270..7378294 (25 bp)
GATCAGAGTGAAGCGATGATCGCTC
LOC_Os10g14004
OsAffx.8351.1.S1_at--874--6111Chr10:7378275..7378299 (25 bp)
GAGTGAAGCGATGATCGCTCTGTTC
LOC_Os10g14004
OsAffx.8351.1.S1_at--869--2671Chr10:7378280..7378304 (25 bp)
AAGCGATGATCGCTCTGTTCGGAAA
LOC_Os10g14004
OsAffx.8351.1.S1_at--305--1651Chr10:7378281..7378305 (25 bp)
AGCGATGATCGCTCTGTTCGGAAAT
LOC_Os10g14004
OsAffx.8351.1.S1_at--1128--4611Chr10:7378282..7378306 (25 bp)
GCGATGATCGCTCTGTTCGGAAATA
LOC_Os10g14004
OsAffx.8351.1.S1_at--159--4051Chr10:7378283..7378307 (25 bp)
CGATGATCGCTCTGTTCGGAAATAT
LOC_Os10g14004
OsAffx.8351.1.S1_at--87--6291Chr10:7378284..7378308 (25 bp)
GATGATCGCTCTGTTCGGAAATATA
LOC_Os10g14004
OsAffx.8351.1.S1_at--761--8851Chr10:7378286..7378310 (25 bp)
TGATCGCTCTGTTCGGAAATATAAC
LOC_Os10g14004
OsAffx.8351.1.S1_at--66--6391Chr10:7378287..7378311 (25 bp)
GATCGCTCTGTTCGGAAATATAACA
LOC_Os10g14004
OsAffx.8351.1.S1_at--690--4131Chr10:7378290..7378314 (25 bp)
CGCTCTGTTCGGAAATATAACATCC
LOC_Os10g14004
Target Sequence 
CTGCTGGTGATCAGAGTGAAGCGATGATCGCTCTGTTCGGAAATATAACATCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8351.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis