Browse Element(s) Details


OsAffx.31524.1.S1_x_at

Description tigr:9639.m04391
TID=OsAffx.31524.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4718011/11Leucine Rich Repeat family protein, expressed
LOC_Os11g469708/11Leucine Rich Repeat family protein, expressed
LOC_Os11g470001/11Leucine Rich Repeat family protein
LOC_Os10g139701/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47140Os.25171.1.A1_at8/1111+27798640..27804297Protein kinase domain containing protein, expressed
LOC_Os11g47140Os.25171.2.S1_at4/1111+27798640..27804297Protein kinase domain containing protein, expressed
LOC_Os11g47150OsAffx.19414.2.S1_at11/1111+27807168..27811469Protein kinase domain containing protein
LOC_Os11g47160NANA11+27812842..27815570Leucine Rich Repeat family protein
LOC_Os11g47170OsAffx.19417.1.S1_at4/1111+27815799..27816476Systemin receptor SR160 precursor, putative
LOC_Os11g47170OsAffx.19417.2.S1_x_at2/1111+27815799..27816476Systemin receptor SR160 precursor, putative
LOC_Os11g47170OsAffx.19417.1.S1_x_at1/1111+27815799..27816476Systemin receptor SR160 precursor, putative
LOC_Os11g47180OsAffx.31524.1.S1_at11/1111+27817912..27821316Leucine Rich Repeat family protein, expressed
LOC_Os11g47180OsAffx.31524.1.S1_x_at11/1111+27817912..27821316Leucine Rich Repeat family protein, expressed
LOC_Os11g47180OsAffx.31524.2.S1_x_at8/1111+27817912..27821316Leucine Rich Repeat family protein, expressed
LOC_Os11g47180OsAffx.19417.1.S1_x_at1/1111+27817912..27821316Leucine Rich Repeat family protein, expressed
LOC_Os11g47190NANA11+27825385..27831540transposon protein, putative, unclassified
LOC_Os11g47200NANA11+27832182..27835418transposon protein, putative, unclassified
LOC_Os11g47210OsAffx.19417.2.S1_x_at11/1111+27840945..27844358Leucine Rich Repeat family protein
LOC_Os11g47210OsAffx.19417.2.S1_at10/1111+27840945..27844358Leucine Rich Repeat family protein
LOC_Os11g47210OsAffx.19417.1.S1_x_at7/1111+27840945..27844358Leucine Rich Repeat family protein
LOC_Os11g47210OsAffx.19417.1.S1_at4/1111+27840945..27844358Leucine Rich Repeat family protein
LOC_Os11g47220NANA11+27844961..27846727retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0007172biological_processsignal complex formation
GO:0009556biological_processmicrosporogenesis
GO:0009934biological_processregulation of meristem organization
GO:0010234biological_processtapetal cell fate specification
GO:0030154biological_processcell differentiation
GO:0016020cellular_componentmembrane
GO:0016021cellular_componentintegral to membrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004702molecular_functionreceptor signaling protein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31524.1.S1_x_at--248--5931Chr11:27820666..27820690 (25 bp)
GAGCACCATGAAGTGGTCCTACACT
LOC_Os11g47180
OsAffx.31524.1.S1_x_at--151--692Chr11:27820729..27820753 (25 bp)
ATGACTGCACATGTATCGGACTTTG
LOC_Os11g47180
OsAffx.31524.1.S1_x_at--793--8773Chr11:27820769..27820793 (25 bp)
TGTTAGGTGATGACAGCTCCATGAT
LOC_Os11g47180
OsAffx.31524.1.S1_x_at--701--6412Chr11:27820791..27820815 (25 bp)
GATCTCTGCGAGTATGCCGGGAACA
LOC_Os11g47180
OsAffx.31524.1.S1_x_at--520--4852Chr11:27820976..27821000 (25 bp)
GCTACGGGATCATGCTACTCGAAGT
LOC_Os11g47180
OsAffx.31524.1.S1_x_at--108--5372Chr11:27821010..27821034 (25 bp)
GAAGAGACCCACAGATGCTATGTTT
LOC_Os11g47180
OsAffx.31524.1.S1_x_at--13--10292Chr11:27821074..27821098 (25 bp)
TTTCCGGTAGAGCTTGTCCATGTAC
LOC_Os11g47180
OsAffx.31524.1.S1_x_at--1038--1932Chr11:27821097..27821121 (25 bp)
ACTGGACACCCGACTTTTACAAGAT
LOC_Os11g47180
OsAffx.31524.1.S1_x_at--20--10492Chr11:27821113..27821137 (25 bp)
TTACAAGATTGCTCTTCTCCCAGTA
LOC_Os11g47180
OsAffx.31524.1.S1_x_at--428--3452Chr11:27821133..27821157 (25 bp)
CAGTAGCTTGCATGGCTTCCTTGTG
LOC_Os11g47180
OsAffx.31524.1.S1_x_at--300--4731Chr11:27821169..27821193 (25 bp)
GCTGGGCTTGCTTTGTTCAGCCGAC
LOC_Os11g47180
Target Sequence 
GAGCACCATGAAGTGGTCCTACACTGTGATTTGAAGCCTAGCAACGTGCTACTTGACGATGATATGACTGCACATGTATC
GGACTTTGGCATTGCAAGGTTATTGTTAGGTGATGACAGCTCCATGATCTCTGCGAGTATGCCGGGAACAGTTGGGTATA
TGGCACCAGAATATGGTGCTCTTGGAAAAGCATCACGAAAGAGCGATGTGTTCAGCTACGGGATCATGCTACTCGAAGTG
TTCACTGGGAAGAGACCCACAGATGCTATGTTTGTGGGGGAACTGAACATAAGGCAGTGGGTTTACCAGGCGTTTCCGGT
AGAGCTTGTCCATGTACTGGACACCCGACTTTTACAAGATTGCTCTTCTCCCAGTAGCTTGCATGGCTTCCTTGTGCCAG
TGTTCGAGCTGGGCTTGCTTTGTTCAGCCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31524.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis