Browse Element(s) Details


OsAffx.19417.2.S1_at

Description tigr:9639.m04401
TID=OsAffx.19417.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4721010/11Leucine Rich Repeat family protein
LOC_Os11g470004/11Leucine Rich Repeat family protein
LOC_Os06g160701/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47170OsAffx.19417.1.S1_at4/1111+27815799..27816476Systemin receptor SR160 precursor, putative
LOC_Os11g47170OsAffx.19417.2.S1_x_at2/1111+27815799..27816476Systemin receptor SR160 precursor, putative
LOC_Os11g47170OsAffx.19417.1.S1_x_at1/1111+27815799..27816476Systemin receptor SR160 precursor, putative
LOC_Os11g47180OsAffx.31524.1.S1_at11/1111+27817912..27821316Leucine Rich Repeat family protein, expressed
LOC_Os11g47180OsAffx.31524.1.S1_x_at11/1111+27817912..27821316Leucine Rich Repeat family protein, expressed
LOC_Os11g47180OsAffx.31524.2.S1_x_at8/1111+27817912..27821316Leucine Rich Repeat family protein, expressed
LOC_Os11g47180OsAffx.19417.1.S1_x_at1/1111+27817912..27821316Leucine Rich Repeat family protein, expressed
LOC_Os11g47190NANA11+27825385..27831540transposon protein, putative, unclassified
LOC_Os11g47200NANA11+27832182..27835418transposon protein, putative, unclassified
LOC_Os11g47210OsAffx.19417.2.S1_x_at11/1111+27840945..27844358Leucine Rich Repeat family protein
LOC_Os11g47210OsAffx.19417.2.S1_at10/1111+27840945..27844358Leucine Rich Repeat family protein
LOC_Os11g47210OsAffx.19417.1.S1_x_at7/1111+27840945..27844358Leucine Rich Repeat family protein
LOC_Os11g47210OsAffx.19417.1.S1_at4/1111+27840945..27844358Leucine Rich Repeat family protein
LOC_Os11g47220NANA11+27844961..27846727retrotransposon protein, putative, LINE subclass
LOC_Os11g47229OsAffx.31526.1.S1_at11/1111+27847465..27848013hypothetical protein
LOC_Os11g47240OsAffx.19418.1.S1_at7/1111+27849300..27852726Leucine Rich Repeat family protein
LOC_Os11g47250Os.40855.2.S1_x_at10/1111+27854032..27859560hypothetical protein
LOC_Os11g47250Os.40855.5.S1_x_at6/1111+27854032..27859560hypothetical protein
LOC_Os11g47250Os.40855.4.S1_x_at4/1111+27854032..27859560hypothetical protein
LOC_Os11g47250Os.40360.1.S1_x_at1/1111+27854032..27859560hypothetical protein
LOC_Os11g47250Os.40855.4.S1_at1/1111+27854032..27859560hypothetical protein
LOC_Os11g47260Os.46012.2.S1_x_at11/1111+27863257..27865566retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g47260Os.46012.3.S1_x_at9/1111+27863257..27865566retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g47260Os.27088.1.A1_x_at5/1111+27863257..27865566retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g47260Os.54691.1.S1_x_at1/1111+27863257..27865566retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0007172biological_processsignal complex formation
GO:0009556biological_processmicrosporogenesis
GO:0009934biological_processregulation of meristem organization
GO:0010234biological_processtapetal cell fate specification
GO:0030154biological_processcell differentiation
GO:0016020cellular_componentmembrane
GO:0016021cellular_componentintegral to membrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004702molecular_functionreceptor signaling protein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19417.2.S1_at--268--1731NONE
ACCAGAGTATGGGACTCTAGGAAAA
NONE
OsAffx.19417.2.S1_at--69--10111Chr11:27843984..27844008 (25 bp)
TATGGGACTCTAGGAAAAGCGTCAC
LOC_Os11g47210
OsAffx.19417.2.S1_at--826--7611Chr11:27843987..27844011 (25 bp)
GGGACTCTAGGAAAAGCGTCACGGA
LOC_Os11g47210
OsAffx.19417.2.S1_at--505--1752Chr11:27843990..27844014 (25 bp)
ACTCTAGGAAAAGCGTCACGGAAGA
LOC_Os11g47210
OsAffx.19417.2.S1_at--689--911Chr11:27843995..27844019 (25 bp)
AGGAAAAGCGTCACGGAAGAGTGAT
LOC_Os11g47210
OsAffx.19417.2.S1_at--954--7392Chr11:27844015..27844039 (25 bp)
GTGATGTGTTCAGTTACGGCATCAT
LOC_Os11g47210
OsAffx.19417.2.S1_at--1032--8672Chr11:27844019..27844043 (25 bp)
TGTGTTCAGTTACGGCATCATGCTG
LOC_Os11g47210
OsAffx.19417.2.S1_at--25--6752Chr11:27844022..27844046 (25 bp)
GTTCAGTTACGGCATCATGCTGCTT
LOC_Os11g47210
OsAffx.19417.2.S1_at--623--10532Chr11:27844023..27844047 (25 bp)
TTCAGTTACGGCATCATGCTGCTTG
LOC_Os11g47210
OsAffx.19417.2.S1_at--1020--8111Chr11:27844151..27844175 (25 bp)
GGACTGCCAACTTCTACAGAATGGT
LOC_Os11g47210
OsAffx.19417.2.S1_at--451--4391Chr11:27844156..27844180 (25 bp)
GCCAACTTCTACAGAATGGTTCTTC
LOC_Os11g47210
Target Sequence 
ACCAGAGTATGGGACTCTAGGAAAAGCGTCACGGAAGAGTGATGTGTTCAGTTACGGCATCATGCTGCTTGAAGTGTTCA
CTGCGAAAAGACCCACAGATGCTATGTTTGTGGGAGAACTGAACATCAGGCAGTGGGTTCAACAGGCGTTTCCTGCAGAG
CTTGTCCATGTGGTGGACTGCCAACTTCTACAGAATGGTTCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19417.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis