Browse Element(s) Details


OsAffx.31524.2.S1_x_at

Description tigr:9639.m04370
TID=OsAffx.31524.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4697011/11Leucine Rich Repeat family protein, expressed
LOC_Os11g471808/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g46930NANA11+27643774..27649590transposon protein, putative, unclassified
LOC_Os11g46940NANA11+27651028..27652101transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g46950OsAffx.19414.1.S1_at11/1111+27656847..27664849Protein kinase domain containing protein, expressed
LOC_Os11g46960OsAffx.19417.1.S1_at4/1111+27666274..27669689Leucine Rich Repeat family protein, expressed
LOC_Os11g46960OsAffx.19417.2.S1_x_at2/1111+27666274..27669689Leucine Rich Repeat family protein, expressed
LOC_Os11g46960OsAffx.19417.1.S1_x_at1/1111+27666274..27669689Leucine Rich Repeat family protein, expressed
LOC_Os11g46970OsAffx.31524.2.S1_x_at11/1111+27670498..27673888Leucine Rich Repeat family protein, expressed
LOC_Os11g46970OsAffx.31524.1.S1_at9/1111+27670498..27673888Leucine Rich Repeat family protein, expressed
LOC_Os11g46970OsAffx.31524.1.S1_x_at8/1111+27670498..27673888Leucine Rich Repeat family protein, expressed
LOC_Os11g46980OsAffx.19417.1.S1_at4/1111+27677599..27682626Leucine Rich Repeat family protein
LOC_Os11g46980OsAffx.19417.2.S1_x_at2/1111+27677599..27682626Leucine Rich Repeat family protein
LOC_Os11g46980OsAffx.19417.1.S1_x_at1/1111+27677599..27682626Leucine Rich Repeat family protein
LOC_Os11g46990NANA11+27683700..27684131retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g47000OsAffx.19417.1.S1_x_at11/1111+27688448..27692198Leucine Rich Repeat family protein
LOC_Os11g47000OsAffx.19417.1.S1_at11/1111+27688448..27692198Leucine Rich Repeat family protein
LOC_Os11g47000OsAffx.19417.2.S1_x_at8/1111+27688448..27692198Leucine Rich Repeat family protein
LOC_Os11g47000OsAffx.19417.2.S1_at4/1111+27688448..27692198Leucine Rich Repeat family protein
LOC_Os11g47000OsAffx.31524.1.S1_x_at1/1111+27688448..27692198Leucine Rich Repeat family protein
LOC_Os11g47000Os.46824.2.S1_at1/1111+27688448..27692198Leucine Rich Repeat family protein
LOC_Os11g47010NANA11+27692707..27693747retrotransposon protein, putative, unclassified
LOC_Os11g47019OsAffx.31526.1.S1_at11/1111+27694479..27695027hypothetical protein
LOC_Os11g47030OsAffx.19418.1.S1_at11/1111+27697364..27700795Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0007172biological_processsignal complex formation
GO:0009934biological_processregulation of meristem organization
GO:0030154biological_processcell differentiation
GO:0016020cellular_componentmembrane
GO:0016021cellular_componentintegral to membrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004702molecular_functionreceptor signaling protein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31524.2.S1_x_at--107--5331Chr11:27673249..27673273 (25 bp)
GAAGTGGCCCTACACTGTGATTTGA
LOC_Os11g46970
OsAffx.31524.2.S1_x_at--454--4852Chr11:27673287..27673311 (25 bp)
GCTACTTGACGATGATGACTGCACA
LOC_Os11g46970
OsAffx.31524.2.S1_x_at--254--5732Chr11:27820731..27820789 (25 bp)
GACTGCACATGTGATGACAGCTCCA
LOC_Os11g47180
OsAffx.31524.2.S1_x_at--700--6412Chr11:27820791..27820815 (25 bp)
GATCTCTGCGAGTATGCCGGGAACA
LOC_Os11g47180
OsAffx.31524.2.S1_x_at--521--4852Chr11:27820976..27821000 (25 bp)
GCTACGGGATCATGCTACTCGAAGT
LOC_Os11g47180
OsAffx.31524.2.S1_x_at--556--8192Chr11:27673626..27673650 (25 bp)
GGCAGTGGGTTTACCAGGCGTTTCT
LOC_Os11g46970
OsAffx.31524.2.S1_x_at--885--8371Chr11:27673642..27673666 (25 bp)
GGCGTTTCTGGTAGAGCTTGTCCAT
LOC_Os11g46970
OsAffx.31524.2.S1_x_at--1039--1932Chr11:27821097..27821121 (25 bp)
ACTGGACACCCGACTTTTACAAGAT
LOC_Os11g47180
OsAffx.31524.2.S1_x_at--19--10492Chr11:27821113..27821137 (25 bp)
TTACAAGATTGCTCTTCTCCCAGTA
LOC_Os11g47180
OsAffx.31524.2.S1_x_at--429--3452Chr11:27821133..27821157 (25 bp)
CAGTAGCTTGCATGGCTTCCTTGTG
LOC_Os11g47180
OsAffx.31524.2.S1_x_at--1010--1091Chr11:27673732..27673756 (25 bp)
AGTGTTTGACCTGGGCTTGCTTTGC
LOC_Os11g46970
Target Sequence 
GAAGTGGCCCTACACTGTGATTTGAAGCCTAGCAACGTGCTACTTGACGATGATGACTGCACATGTGATGACAGCTCCAT
GATCTCTGCGAGTATGCCGGGAACAGTTGGGTACATGGCACCAGAATATGGTGCTCTTGGAAAAGCGTCACGAAAGAGCG
ATGTGTTCAGCTACGGGATCATGCTACTCGAAGTGTTCACTGGGAAAAGACCCACAGATGCTATGTTTGTGGGGGAACTG
AACATAAGGCAGTGGGTTTACCAGGCGTTTCTGGTAGAGCTTGTCCATGTACTGGACACCCGACTTTTACAAGATTGCTC
TTCTCCCAGTAGCTTGCATGGCTTCCTTGTGCCAGTGTTTGACCTGGGCTTGCTTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31524.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis