Browse Element(s) Details


Os.46824.2.S1_at

Description gb:AK109505.1
DB_XREF= gi:32994714
TID=Os.46824.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46824 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0057L21.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-100-A02, full insert sequence.
FL= gb:AK109505.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4162011/11SNF2 family N-terminal domain containing protein
LOC_Os05g457207/11glycogen/starch synthases, ADP-glucose type family protein, expressed
LOC_Os02g062801/11Leucine Rich Repeat family protein
LOC_Os11g470001/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41590Os.12951.1.S1_at11/1110+22059010..22066180Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g41590Os.48056.1.S1_s_at11/1110+22059010..22066180Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g41600NANA10+22070809..22072066hypothetical protein
LOC_Os10g41610NANA10+22073635..22077231retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g41620Os.46824.2.S1_at11/1110+22077753..22085166SNF2 family N-terminal domain containing protein
LOC_Os10g41620Os.46824.1.S1_x_at11/1110+22077753..22085166SNF2 family N-terminal domain containing protein
LOC_Os10g41640Os.22822.1.S1_at9/1110+22094625..22095407Transcription factor HBP-1b, putative, expressed
LOC_Os10g41640Os.22822.1.S1_x_at9/1110+22094625..22095407Transcription factor HBP-1b, putative, expressed
LOC_Os10g41640OsAffx.11749.1.S1_x_at6/1110+22094625..22095407Transcription factor HBP-1b, putative, expressed
LOC_Os10g41640OsAffx.11749.1.S1_at6/1110+22094625..22095407Transcription factor HBP-1b, putative, expressed
LOC_Os10g41650Os.18619.1.S1_at11/1110+22095989..22098088F-box domain containing protein, expressed
LOC_Os10g41660Os.46818.1.S1_at11/1110+22105622..22107184Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g41660Os.31623.1.S1_x_at1/1110+22105622..22107184Zinc finger, C3HC4 type family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009556biological_processmicrosporogenesis
GO:0010021biological_processamylopectin biosynthesis
GO:0010234biological_processtapetal cell fate specification
GO:0019252biological_processstarch biosynthesis
GO:0009507cellular_componentchloroplast
GO:0016020cellular_componentmembrane
GO:0003677molecular_functionDNA binding
GO:0004386molecular_functionhelicase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0009011molecular_functionstarch synthase activity
GO:0016301molecular_functionkinase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46824.2.S1_at--739--1231Chr10:22080983..22081007 (25 bp)
AGTTGCATAACTCTCTTTTTGCCGG
LOC_Os10g41620
Os.46824.2.S1_at--703--101910Chr11:1695960..1695984 (25 bp)
TTTTTGCCGGGTCAGCCAAAGGTTG
NONE
Os.46824.2.S1_at--706--7091Chr10:22081008..22081032 (25 bp)
GTCAGCCAAAGGTTGGCCAACCAAT
LOC_Os10g41620
Os.46824.2.S1_at--1080--934Chr10:22081058..22081082 (25 bp)
AGGAATGTTACAGCGACATTACAAT
LOC_Os10g41620
Os.46824.2.S1_at--669--2075Chr10:22081073..22081097 (25 bp)
ACATTACAATGTCGCGCTAGTCCGG
LOC_Os10g41620
Os.46824.2.S1_at--26--2995Chr10:22081080..22081104 (25 bp)
AATGTCGCGCTAGTCCGGGAGAGAT
LOC_Os10g41620
Os.46824.2.S1_at--775--4576Chr10:22081086..22081110 (25 bp)
GCGCTAGTCCGGGAGAGATCCCAGA
LOC_Os10g41620
Os.46824.2.S1_at--174--8053Chr10:22081097..22081121 (25 bp)
GGAGAGATCCCAGACACAGCGTGAA
LOC_Os10g41620
Os.46824.2.S1_at--999--6033Chr10:22081100..22081124 (25 bp)
GAGATCCCAGACACAGCGTGAACAA
LOC_Os10g41620
Os.46824.2.S1_at--915--1413Chr10:22081108..22081132 (25 bp)
AGACACAGCGTGAACAAGCGAAAGA
LOC_Os10g41620
Os.46824.2.S1_at--928--5971Chr10:22081131..22081155 (25 bp)
GAGAAATAGACAATACAACAACGAT
LOC_Os10g41620
Target Sequence 
AGTTGCATAACTCTCTTTTTGCCGGGTCAGCCAAAGGTTGGCCAACCAATTTCTTAAGATTGGGGAGAAAAACAAAGGAA
TGTTACAGCGACATTACAATGTCGCGCTAGTCCGGGAGAGATCCCAGACACAGCGTGAACAAGCGAAAGAGAAATAGACA
ATACAACAACGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46824.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis