Browse Element(s) Details


OsAffx.11749.1.S1_x_at

Description tigr:9629.m06542
TID=OsAffx.11749.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6597010/11Transcription factor HBP-1b, putative
LOC_Os10g416406/11Transcription factor HBP-1b, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65910Os.29056.1.S1_s_at11/111+38598450..38601127Apocytochrome F, C-terminal family protein
LOC_Os01g65910OsAffx.32260.1.S1_at11/111+38598450..38601127Apocytochrome F, C-terminal family protein
LOC_Os01g65910OsAffx.32259.1.S1_x_at8/111+38598450..38601127Apocytochrome F, C-terminal family protein
LOC_Os01g65910OsAffx.20135.1.S1_x_at1/111+38598450..38601127Apocytochrome F, C-terminal family protein
LOC_Os01g65910Os.57029.1.S1_at1/111+38598450..38601127Apocytochrome F, C-terminal family protein
LOC_Os01g65910OsAffx.20135.1.S1_at1/111+38598450..38601127Apocytochrome F, C-terminal family protein
LOC_Os01g65910OsAffx.1820.1.S1_at1/111+38598450..38601127Apocytochrome F, C-terminal family protein
LOC_Os01g65920Os.12329.1.S1_at11/111+38601921..38605879F-box protein AtFBL5, putative, expressed
LOC_Os01g65920Os.51686.1.S1_at1/111+38601921..38605879F-box protein AtFBL5, putative, expressed
LOC_Os01g65940OsAffx.11748.1.S1_at11/111+38609421..38613643Protein kinase domain containing protein, expressed
LOC_Os01g65950NANA1+38614801..38615042hypothetical protein
LOC_Os01g65960NANA1+38617371..38617718thioesterase family protein, expressed
LOC_Os01g65970OsAffx.11749.1.S1_at11/111+38618659..38619470Transcription factor HBP-1b, putative
LOC_Os01g65970OsAffx.11749.1.S1_x_at10/111+38618659..38619470Transcription factor HBP-1b, putative
LOC_Os01g65970OsAffx.6141.1.S1_x_at7/111+38618659..38619470Transcription factor HBP-1b, putative
LOC_Os01g65980NANA1+38624337..38624765retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g65986Os.49295.1.S1_at11/111+38626848..38632491Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os01g65992OsAffx.23931.1.S1_x_at11/111+38632673..38633575expressed protein
LOC_Os01g65992Os.55676.1.S1_at11/111+38632673..38633575expressed protein
LOC_Os01g66000OsAffx.23932.1.S1_at11/111+38633605..38634552expressed protein
LOC_Os01g66010Os.50896.1.S1_at11/111+38637437..38640480amino acid carrier, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009627biological_processsystemic acquired resistance
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11749.1.S1_x_at--821--3611Chr01:38619382..38619406 (25 bp)
CTTGTGATGGCGTAGCTGATGCCGA
LOC_Os01g65970
OsAffx.11749.1.S1_x_at--781--3411NONE
CAGACGCGCGGGTTCTTGAGAGCCA
NONE
OsAffx.11749.1.S1_x_at--32--10771Chr01:38618951..38618975 (25 bp)
TTGAGCCACTGACGGATCAGTTGTT
LOC_Os01g65970
OsAffx.11749.1.S1_x_at--490--5751Chr01:38618941..38618965 (25 bp)
GACGGATCAGTTGTTTATGGGCATC
LOC_Os01g65970
OsAffx.11749.1.S1_x_at--560--1751Chr01:38618912..38618936 (25 bp)
ACCTACAGCAGTCCTCGCAGCAGGT
LOC_Os01g65970
OsAffx.11749.1.S1_x_at--4--10673Chr10:22095058..22095082 (25 bp)
TTCCTCAAGCTTCGGTCAAACATCA
LOC_Os10g41640
OsAffx.11749.1.S1_x_at--7--9713Chr10:22095062..22095086 (25 bp)
TCAAGCTTCGGTCAAACATCAATGG
LOC_Os10g41640
OsAffx.11749.1.S1_x_at--737--1553Chr10:22095065..22095089 (25 bp)
AGCTTCGGTCAAACATCAATGGCGA
LOC_Os10g41640
OsAffx.11749.1.S1_x_at--1128--3952Chr10:22095070..22095094 (25 bp)
CGGTCAAACATCAATGGCGAACTAA
LOC_Os10g41640
OsAffx.11749.1.S1_x_at--274--8392Chr10:22095085..22095109 (25 bp)
GGCGAACTAAATTGCTTATTACCAT
LOC_Os10g41640
OsAffx.11749.1.S1_x_at--859--2012Chr10:22095090..22095114 (25 bp)
ACTAAATTGCTTATTACCATGGCGT
LOC_Os10g41640
Target Sequence 
CTTGTGATGGCGTAGCTGATGCCGATGAGGAGACCGCGCTTCTCGCCGCAGACGCGCGGGTTCTTGAGAGCCATCTTGAG
CCACTGACGGATCAGTTGTTTATGGGCATCTGCAACCTACAGCAGTCCTCGCAGCAGGTCGAGGACGCGCTGTCGCAGGG
GATGGAGGCTCTGCAGCAGACGCTGGGAGACACATTGGCATCGGCGGCCGCCACCGTGGTCGTCGGCGGCATAGGCGCCG
ACAACGTCACCAACTACATGGGACAGATAGCCATCGCCATGGCCATGCTCACCACGCTGGAGAACTTCCTCAAGCTTCGG
TCAAACATCAATGGCGAACTAAATTGCTTATTACCATGGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11749.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis