Browse Element(s) Details


Os.51686.1.S1_at

Description gb:AK069770.1
DB_XREF= gi:32979794
TID=Os.51686.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51686 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023029J24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023029J24, full insert sequence.
FL= gb:AK063395.1 gb:AK069770.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4142011/11expressed protein
LOC_Os01g659201/11F-box protein AtFBL5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41370NANA8+25999728..26000306amino acid permease family protein, putative
LOC_Os08g41380Os.21219.1.S1_at9/118+26001192..26004468pentatricopeptide, putative, expressed
LOC_Os08g41390Os.10593.1.S1_at11/118+26005624..2601156570 kDa peptidylprolyl isomerase, putative, expressed
LOC_Os08g41400Os.48636.1.S1_at11/118+26010220..26015001expressed protein
LOC_Os08g41410OsAffx.6103.1.S1_at10/118+26017526..26020335Glycosyl hydrolases family 17 protein
LOC_Os08g41410Os.53586.1.S1_at1/118+26017526..26020335Glycosyl hydrolases family 17 protein
LOC_Os08g41420Os.51686.1.S2_at11/118+26021174..26025007expressed protein
LOC_Os08g41420Os.51686.1.S1_at11/118+26021174..26025007expressed protein
LOC_Os08g41420OsAffx.17457.1.S1_at11/118+26021174..26025007expressed protein
LOC_Os08g41430NANA8+26027029..26028746Leucine Rich Repeat family protein
LOC_Os08g41440Os.53946.1.S1_at11/118+26032225..26034179NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g41460Os.53186.1.S1_x_at11/118+26041184..26052277expressed protein
LOC_Os08g41460Os.13734.1.S1_s_at9/118+26041184..26052277expressed protein
LOC_Os08g41460OsAffx.17102.1.S1_at1/118+26041184..26052277expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51686.1.S1_at--299--2431Chr08:26024079..26024103 (25 bp)
AAAACGACCCATATTCTCCATCTGT
LOC_Os08g41420
Os.51686.1.S1_at--1149--3851Chr08:26024058..26024082 (25 bp)
CTGTTGGAGCCATAGATTACCTGTT
LOC_Os08g41420
Os.51686.1.S1_at--358--6531Chr08:26024028..26024052 (25 bp)
GATTTGCCATTTTTATGAACATTGC
LOC_Os08g41420
Os.51686.1.S1_at--785--4971Chr08:26023989..26024013 (25 bp)
GCATCTATGAGTAGTTAGCATTTCT
LOC_Os08g41420
Os.51686.1.S1_at--514--1171Chr08:26023958..26023982 (25 bp)
AGTCAATTTTTATTCTTTGCTCATA
LOC_Os08g41420
Os.51686.1.S1_at--504--3871Chr08:26023920..26023944 (25 bp)
CTGTAAAGCCACTTACTGGGTACTT
LOC_Os08g41420
Os.51686.1.S1_at--494--10471Chr08:26023908..26023932 (25 bp)
TTACTGGGTACTTAGGGCCTATTTG
LOC_Os08g41420
Os.51686.1.S1_at--585--7833Chr08:26023819..26023843 (25 bp)
GGTAGGGCAAAGTTAGCTAATCTAT
LOC_Os08g41420
Os.51686.1.S1_at--945--10419Chr09:14018436..14018455 (20 bp)
TTCTAGAATGTAGCCAAATTGAGCG
NONE
Os.51686.1.S1_at--96--7492Chr08:26023718..26023742 (25 bp)
GTGGGCGCTACCAATTGTTTGGCTT
LOC_Os08g41420
Os.51686.1.S1_at--814--4251Chr08:26023626..26023650 (25 bp)
TCCAAAACGACCCATTATTAACTTG
LOC_Os08g41420
Target Sequence 
AAAACGACCCATATTCTCCATCTGTTGGAGCCATAGATTACCTGTTAAATAGATTTGCCATTTTTATGAACATTGCTTTG
ACAAATGTTTGCATCTATGAGTAGTTAGCATTTCTAGATTTAGTCAATTTTTATTCTTTGCTCATATGAAAAGGTTCCNC
TGTAAAGCCACTTACTGGGTACTTAGGGCCTATTTGGTTCTCTACCCTACCAATTAATTGGTACCAAAATCTAGGCAAAT
TTTGGCACTACCAATTTTTTGGTAGGGCAAAGTTAGCTAATCTATGTTTGGTTTAATACCAATATAAAGCCAAAATTTAG
TATGAGAGTGAAGNAGATTCTAGAATGTAGCCAAATTGAGCGTGGGCGCTACCAATTGTTTGGCTTCAATCCAAACTAGC
ATGTTTACTGTTAAAGTTACCAAAATTTTGGTAGGGTCACGTTTTGGCTTCAATCCAAAACGACCCATTATTAACTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51686.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis