Browse Element(s) Details


Os.53946.1.S1_at

Description gb:AK100965.1
DB_XREF= gi:32986174
TID=Os.53946.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53946 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023142D13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023142D13, full insert sequence.
FL= gb:AK100965.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4144011/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41390Os.10593.1.S1_at11/118+26005624..2601156570 kDa peptidylprolyl isomerase, putative, expressed
LOC_Os08g41400Os.48636.1.S1_at11/118+26010220..26015001expressed protein
LOC_Os08g41410OsAffx.6103.1.S1_at10/118+26017526..26020335Glycosyl hydrolases family 17 protein
LOC_Os08g41410Os.53586.1.S1_at1/118+26017526..26020335Glycosyl hydrolases family 17 protein
LOC_Os08g41420Os.51686.1.S2_at11/118+26021174..26025007expressed protein
LOC_Os08g41420Os.51686.1.S1_at11/118+26021174..26025007expressed protein
LOC_Os08g41420OsAffx.17457.1.S1_at11/118+26021174..26025007expressed protein
LOC_Os08g41430NANA8+26027029..26028746Leucine Rich Repeat family protein
LOC_Os08g41440Os.53946.1.S1_at11/118+26032225..26034179NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g41460Os.53186.1.S1_x_at11/118+26041184..26052277expressed protein
LOC_Os08g41460Os.13734.1.S1_s_at9/118+26041184..26052277expressed protein
LOC_Os08g41460OsAffx.17102.1.S1_at1/118+26041184..26052277expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009225biological_processnucleotide-sugar metabolism
GO:0016020cellular_componentmembrane
GO:0003824molecular_functioncatalytic activity
GO:0050378molecular_functionUDP-glucuronate 4-epimerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53946.1.S1_at--584--8571Chr08:26032737..26032761 (25 bp)
TGGTTCGTCCACTACTACAAGCTCG
LOC_Os08g41440
Os.53946.1.S1_at--614--6191Chr08:26032687..26032711 (25 bp)
GAGGAAATCCATGGCCATGTCCGCC
LOC_Os08g41440
Os.53946.1.S1_at--135--7471Chr08:26032652..26032676 (25 bp)
GTGTCCACCCAATTGTCCTTGGAGG
LOC_Os08g41440
Os.53946.1.S1_at--204--10871Chr08:26032634..26032658 (25 bp)
TTGGAGGCTAGCACTCGTCCTGCAA
LOC_Os08g41440
Os.53946.1.S1_at--810--7251Chr08:26032618..26032642 (25 bp)
GTCCTGCAACTTTTTTCAGTGCTAA
LOC_Os08g41440
Os.53946.1.S1_at--676--71Chr08:26032581..26032605 (25 bp)
ATTGCTGCTTTGTTTCTCCATGATG
LOC_Os08g41440
Os.53946.1.S1_at--520--7991Chr08:26032557..26032581 (25 bp)
GGATGCAATCAACCATGCTGAATTT
LOC_Os08g41440
Os.53946.1.S1_at--506--4771Chr08:26032525..26032549 (25 bp)
GCTGCTTAAGCAAAATCCATGGCTA
LOC_Os08g41440
Os.53946.1.S1_at--331--751Chr08:26032416..26032440 (25 bp)
ATGTCACTGGAATCCTTCTGGTTTA
LOC_Os08g41440
Os.53946.1.S1_at--52--7171Chr08:26032331..26032355 (25 bp)
GTCTCATTTGGTGTGATTCCTGAAT
LOC_Os08g41440
Os.53946.1.S1_at--520--7711Chr08:26032270..26032294 (25 bp)
GGGTGTAAATCCAAGCAGCTTCAGG
LOC_Os08g41440
Target Sequence 
TGGTTCGTCCACTACTACAAGCTCGACACGGCCAAGATCGCCAAGGGCAAGAGGAAATCCATGGCCATGTCCGCCGCGTC
GTGACGTGTCCACCCAATTGTCCTTGGAGGCTAGCACTCGTCCTGCAACTTTTTTCAGTGCTAATTTGTTTAAAAGATTG
CTGCTTTGTTTCTCCATGATGGATGCAATCAACCATGCTGAATTTTGCTTATGCTGCTTAAGCAAAATCCATGGCTAGTA
GAGAGAAAAAGAAATGGACTGGAGTATAGATAAGATGACAGAGCAAAAAAAGGAAGGAGCCAGGGCAGAAGAAGAAAGAT
GATGTCACTGGAATCCTTCTGGTTTAGAATATTTTCCTCTGAACTTATTCTTTTCAGTTAATTACCATCTTGTTCTTGTT
CATTTGGTCTCATTTGGTGTGATTCCTGAATGATCATGCCAGCAACAAGAACACAAGATGCTGTAGTGGGTGTAAATCCA
AGCAGCTTCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53946.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis