Browse Element(s) Details


Os.53186.1.S1_x_at

Description gb:AK071263.1
DB_XREF= gi:32981286
TID=Os.53186.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53186 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023107M13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023083H03, full insert sequence.
FL= gb:AK071263.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4146011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41410OsAffx.6103.1.S1_at10/118+26017526..26020335Glycosyl hydrolases family 17 protein
LOC_Os08g41410Os.53586.1.S1_at1/118+26017526..26020335Glycosyl hydrolases family 17 protein
LOC_Os08g41420Os.51686.1.S2_at11/118+26021174..26025007expressed protein
LOC_Os08g41420Os.51686.1.S1_at11/118+26021174..26025007expressed protein
LOC_Os08g41420OsAffx.17457.1.S1_at11/118+26021174..26025007expressed protein
LOC_Os08g41430NANA8+26027029..26028746Leucine Rich Repeat family protein
LOC_Os08g41440Os.53946.1.S1_at11/118+26032225..26034179NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g41460Os.53186.1.S1_x_at11/118+26041184..26052277expressed protein
LOC_Os08g41460Os.13734.1.S1_s_at9/118+26041184..26052277expressed protein
LOC_Os08g41460OsAffx.17102.1.S1_at1/118+26041184..26052277expressed protein
LOC_Os08g41470Os.17601.1.S1_at11/118+26059851..26063253expressed protein
LOC_Os08g41480Os.53588.1.S1_at11/118+26065378..26068696SAM domain family protein, expressed
LOC_Os08g41490OsAffx.29623.1.S1_at11/118+26070348..26075782hypothetical protein
LOC_Os08g41490OsAffx.29623.2.S1_s_at7/118+26070348..26075782hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53186.1.S1_x_at--406--3771Chr08:26042604..26042628 (25 bp)
CTCTCTCCCTCGAATCGAAAAGCGA
LOC_Os08g41460
Os.53186.1.S1_x_at--131--471Chr08:26042617..26042641 (25 bp)
ATCGAAAAGCGATGGCGGCCTTACC
LOC_Os08g41460
Os.53186.1.S1_x_at--1070--1831Chr08:26042696..26042720 (25 bp)
ACGAGCGGCTACTGTGGCGCCCTTC
LOC_Os08g41460
Os.53186.1.S1_x_at--861--10571Chr08:26042823..26042847 (25 bp)
TTCTCCTCTCCCTCGGTGGATACGG
LOC_Os08g41460
Os.53186.1.S1_x_at--757--6811Chr08:26042909..26042933 (25 bp)
GTTTGCCTTCCTCCCACGGCAAAGG
LOC_Os08g41460
Os.53186.1.S1_x_at--232--4091Chr08:26042965..26042989 (25 bp)
CGACTCCCTCCGACGGCTGTGGTGG
LOC_Os08g41460
Os.53186.1.S1_x_at--122--4071Chr08:26043012..26043036 (25 bp)
CGAGGACGGCTATGGCAACGGCGGA
LOC_Os08g41460
Os.53186.1.S1_x_at--54--3912Chr12:18540341..18540365 (25 bp)
CGGCGGCTTCTTCTTTTTTATGTAT
NONE
Os.53186.1.S1_x_at--967--5331Chr08:26043101..26043125 (25 bp)
GAAGTTTTGTGACGTATTTTGTGAT
LOC_Os08g41460
Os.53186.1.S1_x_at--1039--5751Chr08:26043111..26043135 (25 bp)
GACGTATTTTGTGATTTGGTGATTA
LOC_Os08g41460
Os.53186.1.S1_x_at--1146--10811Chr08:26043126..26043150 (25 bp)
TTGGTGATTATTGTGGTTGTTTTTT
LOC_Os08g41460
Target Sequence 
CTCTCTCCCTCGAATCGAAAAGCGATGGCGGCCTTACCCCCGTAGTAGCGGCGACCTCCCCCACCGAGCAGCGTTGGCGG
CGCCCTCCCCCCACGAGCGGCTACTGTGGCGCCCTTCCCCCTCTCCCCGCGAGCGGCGGCGGCGGCCGCTCCCTCCACGC
TGTCTCGCCTCCCTCGCCGGCAGCCGCTCCCTCTACACTGTCTCGCCACTCTCGCCCCCTTCTCCTCTCCCTCGGTGGAT
ACGGCGGCGGTTGCGGCGGGTTGATGGTGGCCGCGGGCGGATCGGCGGCGGCTTCCTCCACCCCCGTTTGCCTTCCTCCC
ACGGCAAAGGCGGCGGCGGCCGCGGTCGGATCCGGCAACGGCGACTCCCTCCGACGGCTGTGGTGGCGTCGGCGGCGGTT
GCGACGGCCGAGGACGGCTATGGCAACGGCGGAGGGTGGCTGTGGCGATGGCTGGTGGCGGATCCGGCGGCTTCTTCTTT
TTTATGTATATTTTTGTGAAGTTTTGTGACGTATTTTGTGATTTGGTGATTATTGTGGTTGTTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53186.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis