Browse Element(s) Details


OsAffx.29623.1.S1_at

Description tigr:9636.m04215
TID=OsAffx.29623.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4149011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41460Os.53186.1.S1_x_at11/118+26041184..26052277expressed protein
LOC_Os08g41460Os.13734.1.S1_s_at9/118+26041184..26052277expressed protein
LOC_Os08g41460OsAffx.17102.1.S1_at1/118+26041184..26052277expressed protein
LOC_Os08g41470Os.17601.1.S1_at11/118+26059851..26063253expressed protein
LOC_Os08g41480Os.53588.1.S1_at11/118+26065378..26068696SAM domain family protein, expressed
LOC_Os08g41490OsAffx.29623.1.S1_at11/118+26070348..26075782hypothetical protein
LOC_Os08g41490OsAffx.29623.2.S1_s_at7/118+26070348..26075782hypothetical protein
LOC_Os08g41500OsAffx.29620.1.S1_at10/118+26081563..26086104UBA/TS-N domain containing protein, expressed
LOC_Os08g41510OsAffx.29621.1.S1_at11/118+26089944..26093295hypothetical protein
LOC_Os08g41510Os.10442.1.S2_at1/118+26089944..26093295hypothetical protein
LOC_Os08g41520NANA8+26098945..26099864Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29623.1.S1_at--293--531Chr08:26075207..26075231 (25 bp)
ATCGCAGCTGCCACAGTGTGCATAG
LOC_Os08g41490
OsAffx.29623.1.S1_at--195--3471Chr08:26075242..26075266 (25 bp)
CAGGTTGGCCTTTGAACGGCTGTAC
LOC_Os08g41490
OsAffx.29623.1.S1_at--946--1431Chr08:26075305..26075329 (25 bp)
AGAACTGAAGAAGGCCTGCTACCGT
LOC_Os08g41490
OsAffx.29623.1.S1_at--696--5671Chr08:26075362..26075386 (25 bp)
GACTCCCGACGTTCTTTTAATGATA
LOC_Os08g41490
OsAffx.29623.1.S1_at--664--5971Chr08:26075390..26075414 (25 bp)
GAGAAAGGCGGTATCCTCACGCAAC
LOC_Os08g41490
OsAffx.29623.1.S1_at--176--9971Chr08:26075418..26075442 (25 bp)
TACCGAATAACATCCAGCTTGCAAT
LOC_Os08g41490
OsAffx.29623.1.S1_at--872--2391Chr08:26075483..26075507 (25 bp)
AAACTTGAGTTTATGCGCCTGCTGT
LOC_Os08g41490
OsAffx.29623.1.S1_at--213--5991Chr08:26075568..26075592 (25 bp)
GAGACCGTGTCTACAGAGGGCTACA
LOC_Os08g41490
OsAffx.29623.1.S1_at--413--5851Chr08:26075612..26075636 (25 bp)
GACCATCATTGCGTTGTCTGTTTTG
LOC_Os08g41490
OsAffx.29623.1.S1_at--617--7171Chr08:26075627..26075651 (25 bp)
GTCTGTTTTGCATACCGGGTTGACA
LOC_Os08g41490
OsAffx.29623.1.S1_at--146--8671Chr08:26075728..26075752 (25 bp)
TGTGTTCGATAGCTTCTACGTTCCA
LOC_Os08g41490
Target Sequence 
ATCGCAGCTGCCACAGTGTGCATAGAGGCCCAACACAGGTTGGCCTTTGAACGGCTGTACGGAAAAGGTTCTTTCCCATG
CAAAGCTAAAGTGCCTAAAGAACTGAAGAAGGCCTGCTACCGTCAAGGGATTTGGAGCAGCGAGGAAGGGGCCTGGACTC
CCGACGTTCTTTTAATGATAATGGAGAAAGGCGGTATCCTCACGCAACGAGTACCGAATAACATCCAGCTTGCAATTGAT
GGATTTTTTTGGCTAGAGAGAAATGTAGCTTTTGGAAAACTTGAGTTTATGCGCCTGCTGTATGCCTATGGTCCTCTTCT
CAGCACCCTTTGGACAGATGATGGTTATGCACAAACGTTTGGAGACCGTGTCTACAGAGGGCTACAAAAGGATCCAGATT
CGGGGGACCATCATTGCGTTGTCTGTTTTGCATACCGGGTTGACAGCAGGACAAATGAGCTCTACGTTAGAATTATGGAC
AATTGTGCAGATGATGGACCTATCAGATGGGTATTATTTGATGTGTTCGATAGCTTCTACGTTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29623.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis