Browse Element(s) Details


Os.17601.1.S1_at

Description gb:AK120803.1
DB_XREF= gi:37990426
TID=Os.17601.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17601 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023013B14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023013B14, full insert sequence.
FL= gb:AK120803.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4147011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41460Os.53186.1.S1_x_at11/118+26041184..26052277expressed protein
LOC_Os08g41460Os.13734.1.S1_s_at9/118+26041184..26052277expressed protein
LOC_Os08g41460OsAffx.17102.1.S1_at1/118+26041184..26052277expressed protein
LOC_Os08g41470Os.17601.1.S1_at11/118+26059851..26063253expressed protein
LOC_Os08g41480Os.53588.1.S1_at11/118+26065378..26068696SAM domain family protein, expressed
LOC_Os08g41490OsAffx.29623.1.S1_at11/118+26070348..26075782hypothetical protein
LOC_Os08g41490OsAffx.29623.2.S1_s_at7/118+26070348..26075782hypothetical protein
LOC_Os08g41500OsAffx.29620.1.S1_at10/118+26081563..26086104UBA/TS-N domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009626biological_processhypersensitive response
GO:0010167biological_processresponse to nitrate
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17601.1.S1_at--748--6211Chr08:26060145..26060169 (25 bp)
GAGGCTGTTATCAATGTACTTGTAA
LOC_Os08g41470
Os.17601.1.S1_at--112--5971Chr08:26060114..26060138 (25 bp)
GAGAATGGGATTTTCGTTTCCCCAG
LOC_Os08g41470
Os.17601.1.S1_at--792--3451Chr08:26060092..26060116 (25 bp)
CAGTGCGATTCATCAGCTTCGAAAC
LOC_Os08g41470
Os.17601.1.S1_at--961--4891Chr08:26060077..26060101 (25 bp)
GCTTCGAAACTGCATTTGGTCATAG
LOC_Os08g41470
Os.17601.1.S1_at--676--1211Chr08:26060013..26060037 (25 bp)
AGTTCATGCCTGCTGTAATGGTAGA
LOC_Os08g41470
Os.17601.1.S1_at--434--8571Chr08:26059980..26060004 (25 bp)
TGGATTGTTTGGTTCCTTCTGTACT
LOC_Os08g41470
Os.17601.1.S1_at--370--7911Chr08:26059970..26059994 (25 bp)
GGTTCCTTCTGTACTGGATTTACAT
LOC_Os08g41470
Os.17601.1.S1_at--870--4731Chr08:26059919..26059943 (25 bp)
GCTGTTTCTTGTTCTTATCGTCATT
LOC_Os08g41470
Os.17601.1.S1_at--267--511Chr08:26059903..26059927 (25 bp)
ATCGTCATTTAATTTGTCCCTTGTC
LOC_Os08g41470
Os.17601.1.S1_at--678--211Chr08:26059892..26059916 (25 bp)
ATTTGTCCCTTGTCAACACAGAAAG
LOC_Os08g41470
Os.17601.1.S1_at--209--2451Chr08:26059878..26059902 (25 bp)
AACACAGAAAGTCCATTATGCACGT
LOC_Os08g41470
Target Sequence 
GAGGCTGTTATCAATGTACTTGTAAATTGCAGAGAATGGGATTTTCGTTTCCCCAGTGCGATTCATCAGCTTCGAAACTG
CATTTGGTCATAGATTATTTATTTGGAAGTGGGGAAATATACATTACAGTATAGTTCATGCCTGCTGTAATGGTAGATTA
CGTATTGGATTGTTTGGTTCCTTCTGTACTGGATTTACATGCTTGTAATGGCAGGTTAAAGCTTGGGCTGTTTCTTGTTC
TTATCGTCATTTAATTTGTCCCTTGTCAACACAGAAAGTCCATTATGCACGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17601.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis