Browse Element(s) Details


OsAffx.29623.2.S1_s_at

Description tigr:9636.m04228
TID=OsAffx.29623.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ubiquitin-specific proteinase homolog F24L7.8 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4162011/11Ubiquitin carboxyl-terminal hydrolase family protein
LOC_Os08g414907/11hypothetical protein
LOC_Os08g415801/11Ubiquitin carboxyl-terminal hydrolase 1, putative, expressed
LOC_Os08g416401/11Ubiquitin carboxyl-terminal hydrolase family protein
LOC_Os08g416301/11Ubiquitin carboxyl-terminal hydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41570OsAffx.29622.1.S1_at11/118+26127008..26130062hypothetical protein
LOC_Os08g41580Os.54140.1.S1_at11/118+26130550..26135298Ubiquitin carboxyl-terminal hydrolase 1, putative, expressed
LOC_Os08g41580OsAffx.29623.2.S1_s_at1/118+26130550..26135298Ubiquitin carboxyl-terminal hydrolase 1, putative, expressed
LOC_Os08g41590OsAffx.17460.1.S1_at11/118+26136620..26137898POT family protein, expressed
LOC_Os08g41600OsAffx.6106.1.S1_x_at11/118+26139834..26140312proton-dependent oligopeptide transport, putative
LOC_Os08g41610Os.25022.1.A1_at11/118+26142472..26146492Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os08g41620OsAffx.29623.2.S1_s_at11/118+26149187..26153100Ubiquitin carboxyl-terminal hydrolase family protein
LOC_Os08g41620Os.25022.1.A1_at1/118+26149187..26153100Ubiquitin carboxyl-terminal hydrolase family protein
LOC_Os08g41630OsAffx.29624.1.S1_s_at11/118+26154545..26158623Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os08g41630OsAffx.29623.2.S1_s_at1/118+26154545..26158623Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os08g41640OsAffx.29625.1.S1_at11/118+26160847..26166554Ubiquitin carboxyl-terminal hydrolase family protein
LOC_Os08g41640OsAffx.29623.2.S1_s_at1/118+26160847..26166554Ubiquitin carboxyl-terminal hydrolase family protein
LOC_Os08g41650Os.53468.1.S1_at11/118+26168245..26169036expressed protein
LOC_Os08g41660OsAffx.29626.1.S1_at11/118+26171295..26171876hypothetical protein
LOC_Os08g41670Os.57148.1.S1_at10/118+26174601..26177536Uncharacterized protein family UPF0016 containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0000502cellular_componentproteasome complex (sensu Eukaryota)
GO:0004843molecular_functionubiquitin-specific protease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29623.2.S1_s_at--1136--3513Chr08:26072040..26072064 (25 bp)
CATGATATCAACTCTCTTGCATCGA
LOC_Os08g41490
OsAffx.29623.2.S1_s_at--980--834Chr08:26072113..26072132 (20 bp)
ATGGACCTGTGAGAACTGCTCCAAA
LOC_Os08g41490
OsAffx.29623.2.S1_s_at--196--5432Chr08:26072141..26072164 (24 bp)
GAAGCCAGGCATCATGTCAAGTACT
LOC_Os08g41490
OsAffx.29623.2.S1_s_at--359--992Chr08:26072167..26072191 (25 bp)
AGGAGGACACAACAGCTGGAGACCA
LOC_Os08g41490
OsAffx.29623.2.S1_s_at--866--5272Chr08:26072259..26072283 (25 bp)
GAATGTCCCATTCAAACACGTCTTA
LOC_Os08g41490
OsAffx.29623.2.S1_s_at--390--2472Chr08:26072273..26072297 (25 bp)
AACACGTCTTATTCGCAAGTTGCCA
LOC_Os08g41490
OsAffx.29623.2.S1_s_at--922--5171Chr08:26150464..26150488 (25 bp)
GCAAGTTGCCACCTGTATTGACCAT
LOC_Os08g41620
OsAffx.29623.2.S1_s_at--373--7591Chr08:26150366..26150390 (25 bp)
GGGCAGTTCATGGATCCCAGGTAGT
LOC_Os08g41620
OsAffx.29623.2.S1_s_at--539--5612Chr08:26073391..26073880 (25 bp)
GACAAGTGACAACTGCATCTGTTTT
LOC_Os08g41490
OsAffx.29623.2.S1_s_at--178--1251Chr08:26150284..26150308 (25 bp)
AGATTTCTGTTTGTTCTATGCCCGT
LOC_Os08g41620
OsAffx.29623.2.S1_s_at--1089--3691Chr08:26150269..26150293 (25 bp)
CTATGCCCGTGTAATTAAGTTTCTT
LOC_Os08g41620
Target Sequence 
CATGATATCAACTCTCTTGCATCGATTGAGAAATGCTTGGAATTGTATCTTGAAACAGAGATAGAATGGACCTGTGAGAA
CTGCTCCAAAGTTCTTAAGAAGCCAGGCATCATGTCAAGTACTAAGGAGGACACAACAGCTGGAGACCAGAGTGAACAGT
TAGAGAAGAGTGCACACCAAGTGGAAGAAAACCAAAATGAGCAGAAAGATAAGAATGAATGTCCCATTCAAACACGTCTT
ATTCGCAAGTTGCCACCTGTATTGACCATTCATCTGATGAGATATTTGGAGGATTTAACGAAGGTGATAGGACATGTGAG
CTTTAAGGAAATCCTTGATGTGGGGCAGTTCATGGATCCCAGGTAGTGACAAGTGACAACTGCATCTGTTTTTTTCCGAA
AACATATGACTGATGATGTTTATTAGATTTCTGTTTGTTCTATGCCCGTGTAATTAAGTTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29623.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis