Browse Element(s) Details


Os.53468.1.S1_at

Description gb:AK072801.1
DB_XREF= gi:32982824
TID=Os.53468.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53468 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023138N11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023138N11, full insert sequence.
FL= gb:AK072801.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4165011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41610Os.25022.1.A1_at11/118+26142472..26146492Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os08g41620OsAffx.29623.2.S1_s_at11/118+26149187..26153100Ubiquitin carboxyl-terminal hydrolase family protein
LOC_Os08g41620Os.25022.1.A1_at1/118+26149187..26153100Ubiquitin carboxyl-terminal hydrolase family protein
LOC_Os08g41630OsAffx.29624.1.S1_s_at11/118+26154545..26158623Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os08g41630OsAffx.29623.2.S1_s_at1/118+26154545..26158623Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os08g41640OsAffx.29625.1.S1_at11/118+26160847..26166554Ubiquitin carboxyl-terminal hydrolase family protein
LOC_Os08g41640OsAffx.29623.2.S1_s_at1/118+26160847..26166554Ubiquitin carboxyl-terminal hydrolase family protein
LOC_Os08g41650Os.53468.1.S1_at11/118+26168245..26169036expressed protein
LOC_Os08g41660OsAffx.29626.1.S1_at11/118+26171295..26171876hypothetical protein
LOC_Os08g41670Os.57148.1.S1_at10/118+26174601..26177536Uncharacterized protein family UPF0016 containing protein, expressed
LOC_Os08g41680OsAffx.17462.1.S1_at10/118+26179517..26180997expressed protein
LOC_Os08g41690Os.54259.1.S1_at11/118+26181912..26184983expressed protein
LOC_Os08g41700Os.50600.1.S1_at11/118+26186430..26189682expressed protein
LOC_Os08g41710Os.6151.1.S1_at11/118+26192162..26195774FHA domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53468.1.S1_at--174--791Chr08:26168605..26168629 (25 bp)
ATGGGCAACTTCCTCCAGGACGTCG
LOC_Os08g41650
Os.53468.1.S1_at--553--2891Chr08:26168678..26168702 (25 bp)
AAGGCGGGTGCCACTACCTGTTCGA
LOC_Os08g41650
Os.53468.1.S1_at--43--4411Chr08:26168687..26168711 (25 bp)
GCCACTACCTGTTCGAGGACGGGAA
LOC_Os08g41650
Os.53468.1.S1_at--702--5751Chr08:26168704..26168728 (25 bp)
GACGGGAAGATGTTCCTCGTCACCG
LOC_Os08g41650
Os.53468.1.S1_at--672--9091Chr08:26168792..26168816 (25 bp)
TGCTCAGGGAGTGCGCCCACGTGCT
LOC_Os08g41650
Os.53468.1.S1_at--1022--8791Chr08:26168822..26168846 (25 bp)
TGTTCCCCACCGTGTGCAGGTACAA
LOC_Os08g41650
Os.53468.1.S1_at--598--8691Chr08:26168834..26168858 (25 bp)
TGTGCAGGTACAAGCCCCATGAACA
LOC_Os08g41650
Os.53468.1.S1_at--224--3511Chr08:26168851..26168875 (25 bp)
CATGAACACAACTACGTCGGCAAGA
LOC_Os08g41650
Os.53468.1.S1_at--240--9451Chr08:26168867..26168891 (25 bp)
TCGGCAAGATCATCGGACGCTGGCG
LOC_Os08g41650
Os.53468.1.S1_at--974--8471Chr08:26168887..26168911 (25 bp)
TGGCGATGGTGGTTCAACTACTAAT
LOC_Os08g41650
Os.53468.1.S1_at--914--6791Chr08:26168988..26169012 (25 bp)
GTTTTACTAGCCTATTATAGCCGGT
LOC_Os08g41650
Target Sequence 
ATGGGCAACTTCCTCCAGGACGTCGTCGTCTTCAACAGCAGCGCCGCCTACGCGCTGCGGTGCCGCGTCGAGGAAGGCGG
GTGCCACTACCTGTTCGAGGACGGGAAGATGTTCCTCGTCACCGGGCGGCGCGCCACCAGGGCGGCGCCGGCGCGGCGGA
GGGAGAAGAGGCTCGTCGGCGACGTGGTGCTCAGGGAGTGCGCCCACGTGCTCGGCGTGTTCCCCACCGTGTGCAGGTAC
AAGCCCCATGAACACAACTACGTCGGCAAGATCATCGGACGCTGGCGATGGTGGTTCAACTACTAATTAACTGTTATTAT
GATGATGATTATTGATAGCATTGTTAATTAGATGATTAATTACTACTAGATTAACTAGCTATTGTTTTACTAGCCTATTA
TAGCCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53468.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis