Browse Element(s) Details


OsAffx.29625.1.S1_at

Description tigr:9636.m04230
TID=OsAffx.29625.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4164011/11Ubiquitin carboxyl-terminal hydrolase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41590OsAffx.17460.1.S1_at11/118+26136620..26137898POT family protein, expressed
LOC_Os08g41600OsAffx.6106.1.S1_x_at11/118+26139834..26140312proton-dependent oligopeptide transport, putative
LOC_Os08g41610Os.25022.1.A1_at11/118+26142472..26146492Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os08g41620OsAffx.29623.2.S1_s_at11/118+26149187..26153100Ubiquitin carboxyl-terminal hydrolase family protein
LOC_Os08g41620Os.25022.1.A1_at1/118+26149187..26153100Ubiquitin carboxyl-terminal hydrolase family protein
LOC_Os08g41630OsAffx.29624.1.S1_s_at11/118+26154545..26158623Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os08g41630OsAffx.29623.2.S1_s_at1/118+26154545..26158623Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os08g41640OsAffx.29625.1.S1_at11/118+26160847..26166554Ubiquitin carboxyl-terminal hydrolase family protein
LOC_Os08g41640OsAffx.29623.2.S1_s_at1/118+26160847..26166554Ubiquitin carboxyl-terminal hydrolase family protein
LOC_Os08g41650Os.53468.1.S1_at11/118+26168245..26169036expressed protein
LOC_Os08g41660OsAffx.29626.1.S1_at11/118+26171295..26171876hypothetical protein
LOC_Os08g41670Os.57148.1.S1_at10/118+26174601..26177536Uncharacterized protein family UPF0016 containing protein, expressed
LOC_Os08g41680OsAffx.17462.1.S1_at10/118+26179517..26180997expressed protein
LOC_Os08g41690Os.54259.1.S1_at11/118+26181912..26184983expressed protein
LOC_Os08g41700Os.50600.1.S1_at11/118+26186430..26189682expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0000502cellular_componentproteasome complex (sensu Eukaryota)
GO:0004843molecular_functionubiquitin-specific protease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29625.1.S1_at--1042--2311Chr08:26162327..26162351 (25 bp)
AAAGGTGCTCGGAAGTCAGATGTCA
LOC_Os08g41640
OsAffx.29625.1.S1_at--278--951Chr08:26162260..26162284 (25 bp)
AGGACACAGCAGTTGGTGGATACCA
LOC_Os08g41640
OsAffx.29625.1.S1_at--422--2231Chr08:26162188..26162212 (25 bp)
AAAAACCTGAATGCCCTGAAGGTGT
LOC_Os08g41640
OsAffx.29625.1.S1_at--864--2891Chr08:26162170..26162194 (25 bp)
AAGGTGTTCAAGACGCTGTACCTCA
LOC_Os08g41640
OsAffx.29625.1.S1_at--479--1751Chr08:26162151..26162175 (25 bp)
ACCTCATTGTGTCCCAGCTGAGAGA
LOC_Os08g41640
OsAffx.29625.1.S1_at--173--2131Chr08:26162127..26162151 (25 bp)
ACAGGACAACCTGTTGAGCAGTCAG
LOC_Os08g41640
OsAffx.29625.1.S1_at--766--7951Chr08:26162103..26162127 (25 bp)
GGATCAAAATGCCACCACACTAGAT
LOC_Os08g41640
OsAffx.29625.1.S1_at--322--9831Chr08:26162001..26162025 (25 bp)
TAAAGGTGCTACTCAAACACGGATT
LOC_Os08g41640
OsAffx.29625.1.S1_at--189--1491Chr08:26161976..26162000 (25 bp)
AGCAAGTTGCCACTTGTGTTAACCA
LOC_Os08g41640
OsAffx.29625.1.S1_at--303--5811Chr08:26161865..26161889 (25 bp)
GACCCCAGGTACTGACTACTGCATT
LOC_Os08g41640
OsAffx.29625.1.S1_at--1031--1531Chr08:26161816..26161840 (25 bp)
AGCATTTCTATACAGCAACTTCTAA
LOC_Os08g41640
Target Sequence 
AAAGGTGCTCGGAAGTCAGATGTCACTGAAGGTACATACAGTGAACAGATGCTGTCAAGTACTAATGAGGACACAGCAGT
TGGTGGATACCAGAGGGAACAGTCAGAGAAGATAACATGCCAAAGTGAGCAATCCAACAAAAAACCTGAATGCCCTGAAG
GTGTTCAAGACGCTGTACCTCATTGTGTCCCAGCTGAGAGACAGGACAACCTGTTGAGCAGTCAGGATCAAAATGCCACC
ACACTAGATGAAGGAAGGGGTAAGCAAAAGCTTCATCATAGTGCACACCAAGTCGAAGAATGCCAAAATGAGCAGAAAGA
TAGGAATAAAGGTGCTACTCAAACACGGATTAGCAAGTTGCCACTTGTGTTAACCATTCATCTGATGAGATCTTTGTTGG
GGCCTGATAAGGTGATGGGACATGTGAGCTTTAAGGAAATCCTTGATATGGGACTGTTCATGGACCCCAGGTACTGACTA
CTGCATTTTTTTTAACAAAATTGTAACTGTTAGCATTTCTATACAGCAACTTCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29625.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis